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WormBase Tree Display for Expression_cluster: WBPaper00040560:hpl-2_embryo_upregulated

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Name Class

WBPaper00040560:hpl-2_embryo_upregulatedDescriptionTranscripts down regulated in hpl-2(tm1489) embryo comparing to N2 in tiling array analysis.
SpeciesCaenorhabditis elegans
AlgorithmOligos from the tiling array were mapped to chromosome coordinates of the exons from Wormbase WS180. Any oligo that mapped to a gene on both the Watson and Crick strands was excluded. The remaining oligos were then grouped together (perfect match and mismatch) into probe sets and written out into an Affymetrix CDF file. The CDF file was converted into an R-package and loaded into R. The expression values were calculated using the justRMA function from Bioconductor. This used a Benjamini and Hochberg false discovery rate correction.
ReferenceWBPaper00040560
Based_on_WB_Release180
GeneWBGene00012554Fold change: 1.78008556759149, p_value: 0.0175501699
WBGene00021625Fold change: 1.60986491603664, p_value: 0.0444248005
WBGene00021975Fold change: 2.94399470581684, p_value: 0.0016592043
WBGene00013658Fold change: 1.69466619677985, p_value: 0.0046913623
WBGene00022736Fold change: 1.64784936712563, p_value: 0.0160107038
WBGene00014214Fold change: 1.71427853789422, p_value: 0.006110791
WBGene00007347Fold change: 2.16834029057884, p_value: 0.0091188706
WBGene00022413Fold change: 1.71144420447983, p_value: 0.0247899994
WBGene00011284Fold change: 1.86517294766949, p_value: 0.0165427656
WBGene00002257Fold change: 1.80638635888173, p_value: 0.0256819136
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WBGene00003408Fold change: 1.65130064847255, p_value: 0.0062855736
WBGene00022610Fold change: 1.72450386116823, p_value: 0.0426470098
WBGene00016224Fold change: 1.69805238242142, p_value: 0.0335246014
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WBGene00008045
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WBGene00011495Fold change: 1.91495805554968, p_value: 0.0404481588
WBGene00010461Fold change: 2.32091730672376, p_value: 0.005029848
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WBGene00018823Fold change: 1.65664423615408, p_value: 0.0168403709
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WBGene00007343Fold change: 1.92185860720812, p_value: 0.0339557601
WBGene00019858Fold change: 5.65790466890455, p_value: 1.88E-07
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WBGene00000718Fold change: 1.61061238664213, p_value: 0.0405636334
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WBGene00008997
WBGene00004363Fold change: 2.69704896578438, p_value: 0.0310947721
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WBGene00016135Fold change: 2.06130800153183, p_value: 0.044899024
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WBGene00020163
WBGene00020571Fold change: 1.67818110880688, p_value: 0.0244274214
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WBGene00014208
WBGene00006399Fold change: 1.69640267795635, p_value: 0.0034700507
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WBGene00018074
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WBGene00018582
WBGene00019748Fold change: 1.74931427036138, p_value: 0.036135892
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WBGene00006749Fold change: 2.04065739370394, p_value: 0.0257219133
WBGene00019448Fold change: 2.6572732457733, p_value: 0.0024999281
WBGene00010251Fold change: 4.34530202068845, p_value: 0.0118390534
WBGene00000492Fold change: 1.70907495184633, p_value: 0.0429756585
WBGene00002030Fold change: 1.89432468300967, p_value: 0.0245862172
WBGene00016862Fold change: 3.14020519386892, p_value: 0.0013087183
WBGene00005147Fold change: 1.87527944303833, p_value: 0.025383848
WBGene00008975Fold change: 1.60179684484227, p_value: 0.0110351318
WBGene00011333Fold change: 1.86445142820323, p_value: 0.017114388
WBGene00022667Fold change: 1.60073741839817, p_value: 0.011254027
WBGene00010103Fold change: 1.57305671943732, p_value: 0.030063344
WBGene00011974Fold change: 1.57852711552393, p_value: 0.0178024585
WBGene00001544Fold change: 4.26760422940109, p_value: 8.88E-07
WBGene00017841Fold change: 1.84023125757525, p_value: 0.0471589247
WBGene00011185Fold change: 2.27303014838526, p_value: 0.0249188011
WBGene00021678Fold change: 1.64448842675005, p_value: 0.0028217309
WBGene00044374Fold change: 2.75089047959855, p_value: 0.0146934583
WBGene00007421Fold change: 1.99359790721199, p_value: 0.0337548847
WBGene00044693Fold change: 2.12772439489713, p_value: 0.0425239073
WBGene00012782Fold change: 1.95767847677151, p_value: 0.0166898868
WBGene00008957
WBGene00010362Fold change: 1.79440566589359, p_value: 0.0051338828
WBGene00013900Fold change: 3.8102269706729, p_value: 0.0001027118
WBGene00017535Fold change: 2.03965835324753, p_value: 0.0141058362
WBGene00009850Fold change: 1.71655485994458, p_value: 0.0230947223
WBGene00016366Fold change: 1.66816658068317, p_value: 0.0293396421
WBGene00009518Fold change: 1.60369970207693, p_value: 0.0425161677
WBGene00012922Fold change: 2.04220772201858, p_value: 0.0262809751
WBGene00008684Fold change: 1.51750683191184, p_value: 0.0276124586
WBGene00002012Fold change: 2.17431598584925, p_value: 0.013046685
WBGene00008228Fold change: 2.24731508207424, p_value: 0.017267479
WBGene00011497Fold change: 1.59641995772531, p_value: 0.0391342678
WBGene00008315Fold change: 1.80826918493742, p_value: 0.0498292131
WBGene00000558Fold change: 1.51928234627161, p_value: 0.0207150351
WBGene00004145Fold change: 1.84959054115852, p_value: 0.0179876727
WBGene00012324Fold change: 3.02506601902533, p_value: 0.0066036442
WBGene00018577Fold change: 1.65719329476914, p_value: 0.0170595383
WBGene00015911Fold change: 2.06969518498608, p_value: 0.0116806626
WBGene00007180Fold change: 1.54849201501333, p_value: 0.0477750249
WBGene00007158Fold change: 1.64046778359614, p_value: 0.029090625
WBGene00001490Fold change: 1.88571855213328, p_value: 0.0496603377
WBGene00020653Fold change: 2.47186393320099, p_value: 6.41E-05
WBGene00009511Fold change: 1.80502463804312, p_value: 0.0023214554
WBGene00001677Fold change: 1.63008541980085, p_value: 0.0495726942
WBGene00019488Fold change: 1.55710908742313, p_value: 0.0385413874
WBGene00009723Fold change: 1.51302221066968, p_value: 0.0409722553
WBGene00006747Fold change: 1.89619509022679, p_value: 0.0400727229
WBGene00011105Fold change: 2.13859389773614, p_value: 0.0015920335
WBGene00011073Fold change: 2.30183931762111, p_value: 0.0336346928
WBGene00011437Fold change: 1.62045103303582, p_value: 0.0486886675
WBGene00010661Fold change: 3.14926762649276, p_value: 0.0032888473
WBGene00009804Fold change: 2.00116270379481, p_value: 0.0101497985
WBGene00013897Fold change: 2.13547144626547, p_value: 0.0413737724
WBGene00008963Fold change: 1.81582779089642, p_value: 0.0494761595
WBGene00018521Fold change: 2.29168116650844, p_value: 0.0329844644
WBGene00007856Fold change: 2.60415446867503, p_value: 0.0008270907
WBGene00007908Fold change: 2.24465117797769, p_value: 0.0096318564
WBGene00013181Fold change: 2.56185411672767, p_value: 4.55E-05
WBGene00011768Fold change: 1.81317384382276, p_value: 0.0487387118
WBGene00044394Fold change: 2.3398459252526, p_value: 0.0029966614
WBGene00009233Fold change: 1.58327977638389, p_value: 0.0313973418
WBGene00009843Fold change: 1.93763864944708, p_value: 0.0352663861
WBGene00007505Fold change: 1.76380808886018, p_value: 0.0388371388
WBGene00018952Fold change: 2.30958480295698, p_value: 0.0227715715
WBGene00022810Fold change: 1.65649907257876, p_value: 0.0350154182
WBGene00011222Fold change: 1.95200737791359, p_value: 0.0046991141
WBGene00044502Fold change: 2.77946465017619, p_value: 0.0007379513
WBGene00000742Fold change: 2.04318247858244, p_value: 0.0126864988
WBGene00001730Fold change: 2.63039775661004, p_value: 0.0055004937
WBGene00008476Fold change: 1.78488410820933, p_value: 0.0282250096
WBGene00044756Fold change: 2.31327390913833, p_value: 0.0135027901
WBGene00010041Fold change: 1.8579497260428, p_value: 0.0131319149
WBGene00003752Fold change: 1.75571912032225, p_value: 0.0337859279
WBGene00009789Fold change: 1.68112544453807, p_value: 0.0220432347
WBGene00044391Fold change: 2.13552167360733, p_value: 0.0308725145
WBGene00077697Fold change: 1.68925599276502, p_value: 0.0280122544
WBGene00007229Fold change: 2.27253274262139, p_value: 0.0361016941
WBGene00020551Fold change: 1.92259905330219, p_value: 0.0291307502
WBGene00004113Fold change: 1.75936627422229, p_value: 0.027241533
WBGene00019564Fold change: 2.82754771800486, p_value: 0.0108150936
WBGene00009964Fold change: 2.00769946269383, p_value: 0.0387387073
WBGene00022144Fold change: 1.73514620388893, p_value: 0.0061821067
WBGene00006586Fold change: 1.71211886845765, p_value: 0.0215658949
WBGene00009711Fold change: 2.03464034815427, p_value: 0.0497728936
WBGene00003564Fold change: 1.55532472158592, p_value: 0.0244013496
WBGene00018591Fold change: 2.22616047416585, p_value: 0.0097214339
WBGene00013659Fold change: 6.3490561991299, p_value: 4.47E-06
WBGene00019590Fold change: 1.56819823848151, p_value: 0.0446585358
WBGene00015679Fold change: 2.82072279261767, p_value: 0.0075835197
WBGene00012759Fold change: 1.51493755602318, p_value: 0.0279433499
WBGene00017133Fold change: 2.54072505738565, p_value: 0.0057600331
WBGene00019593Fold change: 2.33281683715966, p_value: 0.0016198262
WBGene00019134Fold change: 1.87589455694988, p_value: 0.0440512508
WBGene00018468
WBGene00015362Fold change: 1.85739653362964, p_value: 0.0177857623
WBGene00001157Fold change: 2.38528984408001, p_value: 0.0210022316
WBGene00044188Fold change: 1.58892974565262, p_value: 0.0418261771
WBGene00017236Fold change: 1.83209272363678, p_value: 0.040529375
WBGene00008387Fold change: 1.62168731095971, p_value: 0.0400911664
WBGene00000668Fold change: 1.73581873734712, p_value: 0.0038124122
WBGene00003038
WBGene00003941
WBGene00008862Fold change: 5.09377859243468, p_value: 4.54E-08
WBGene00016550Fold change: 1.83906117994107, p_value: 0.044570289
WBGene00017467Fold change: 2.45737785025779, p_value: 0.0006178245
WBGene00020883Fold change: 3.11358321686632, p_value: 0.0005618815
WBGene00022564Fold change: 2.09185268089201, p_value: 0.003237209
WBGene00022644Fold change: 4.05748901411869, p_value: 0.0004550995
WBGene00007246Fold change: 1.89816137575226, p_value: 0.0203389147
WBGene00015605Fold change: 10.6014544643355, p_value: 1.26E-06
WBGene00000864Fold change: 2.0296792641019, p_value: 0.0013185697
WBGene00010477Fold change: 1.79407925429875, p_value: 0.0170619996
WBGene00010874Fold change: 2.50753767176762, p_value: 0.0043312667
WBGene00019931Fold change: 2.29787932297564, p_value: 0.0042146215
WBGene00019932Fold change: 2.51715211133717, p_value: 0.0008888512
WBGene00011714Fold change: 3.35398897736445, p_value: 0.0130262336
WBGene00003465Fold change: 2.29876626896457, p_value: 0.0475260943
WBGene00020794Fold change: 1.52021305306675, p_value: 0.0475762252
WBGene00021015Fold change: 2.33359250398376, p_value: 0.0088860002
WBGene00021034Fold change: 2.205875177128, p_value: 0.0063865603
WBGene00000028Fold change: 2.44211080248696, p_value: 0.0002561334
WBGene00045282Fold change: 1.92257939730179, p_value: 0.026107168
WBGene00005490Fold change: 1.89008151472836, p_value: 0.0216886936
WBGene00022215Fold change: 2.65007053674233, p_value: 0.0033124409
WBGene00013590Fold change: 3.70617176608508, p_value: 0.0114401466
WBGene00013840Fold change: 2.66496444556719, p_value: 0.0493887396
WBGene00006651Fold change: 1.66339026456673, p_value: 0.0185266378
WBGene00014293Fold change: 3.43869857927185, p_value: 0.0080088024
WBGene00023159Fold change: 2.09411794298451, p_value: 0.0248963524
WBGene00044935Fold change: 2.98728025763304, p_value: 0.0303522448
WBGene00044972Fold change: 2.44587027366932, p_value: 0.0033394302
WBGene00002048Fold change: 2.20653925756512, p_value: 0.015662848
WBGene00015124Fold change: 1.68063294209928, p_value: 0.0356417524
WBGene00003002Fold change: 2.16388246600656, p_value: 0.0010460246
WBGene00007336Fold change: 1.99740670107526, p_value: 0.041472155
WBGene00002881Fold change: 1.64919863276298, p_value: 0.0223706101
WBGene00002026Fold change: 3.9984368405145, p_value: 0.0445872208
WBGene00015753Fold change: 1.8327431778445, p_value: 0.025098026
WBGene00000430Fold change: 2.19814313219159, p_value: 0.0005043798
WBGene00007751Fold change: 1.56496022140568, p_value: 0.0331009511
WBGene00016204Fold change: 1.63743284122954, p_value: 0.0373146521
WBGene00007801Fold change: 1.80272994650672, p_value: 0.0318157443
WBGene00016310Fold change: 1.53554673616837, p_value: 0.0402194453
WBGene00007913Fold change: 1.69473833998771, p_value: 0.0498995147
WBGene00003850Fold change: 2.00594346531524, p_value: 0.0216298083
WBGene00007931Fold change: 1.89823195807028, p_value: 0.0244640462
WBGene00016594Fold change: 3.15797949631246, p_value: 0.0008848902
WBGene00006852Fold change: 2.26135799507999, p_value: 0.0224670323
WBGene00008283Fold change: 3.18749752994731, p_value: 0.0095803344
WBGene00008336Fold change: 2.2224009199079, p_value: 0.0077670496
WBGene00003753Fold change: 1.55432691693842, p_value: 0.013180488
WBGene00016997Fold change: 2.41000663508211, p_value: 0.0040487613
WBGene00008415Fold change: 1.77577980872828, p_value: 0.0165775224
WBGene00017060Fold change: 1.75341191610579, p_value: 0.0295501616
WBGene00008603Fold change: 1.59707554163051, p_value: 0.0070492449
WBGene00008820Fold change: 1.73065347702197, p_value: 0.0256619995
WBGene00003635Fold change: 1.67107564509818, p_value: 0.0494416578
WBGene00003745Fold change: 2.17796269149843, p_value: 0.0210910069
WBGene00008967Fold change: 2.93416700332874, p_value: 0.0060399877
WBGene00000242Fold change: 1.63326378493134, p_value: 0.0487885191
WBGene00009058Fold change: 1.90448475885857, p_value: 0.0051233219
WBGene00017772Fold change: 1.50458244347826, p_value: 0.036089686
WBGene00009135Fold change: 2.4523681223665, p_value: 0.0024731446
WBGene00018036Fold change: 2.37092971960733, p_value: 0.0108198904
WBGene00004300Fold change: 1.56616756716715, p_value: 0.0415433792
WBGene00003511Fold change: 2.2060817070839, p_value: 0.0125439455
WBGene00005241Fold change: 1.90087838653073, p_value: 0.0046172112
WBGene00019064Fold change: 2.71347047829952, p_value: 0.0175006884
WBGene00019364Fold change: 1.77425224313654, p_value: 0.0216795765
WBGene00010700Fold change: 1.66197021283417, p_value: 0.0129934825
WBGene00019599Fold change: 1.67763735851476, p_value: 0.0088767774
WBGene00010790Fold change: 2.06470795269585, p_value: 0.0009838938
WBGene00011060Fold change: 1.76730488134075, p_value: 0.0018595899
WBGene00019944Fold change: 2.01648982615795, p_value: 0.0203041009
WBGene00001669Fold change: 1.81010684331724, p_value: 0.0262108613
WBGene00011259Fold change: 1.75007774112833, p_value: 0.0306340133
WBGene00011338Fold change: 1.5202921036274, p_value: 0.0046397991
WBGene00044078Fold change: 2.10517988827763, p_value: 0.0398532101
WBGene00011436Fold change: 2.4280308857457, p_value: 0.0069438321
WBGene00003514Fold change: 2.27644055490797, p_value: 0.0186823718
WBGene00011880Fold change: 2.32047930273083, p_value: 0.0245901306
WBGene00011966Fold change: 2.02308066598349, p_value: 0.0443862338
WBGene00011979Fold change: 2.31140728795362, p_value: 0.0161161769
WBGene00000368Fold change: 1.78585390597017, p_value: 0.0348592877
WBGene00006609Fold change: 1.69551839662204, p_value: 0.024264103
WBGene00006583Fold change: 1.69821974668247, p_value: 0.0242886267
WBGene00006467
Attribute_ofTiling_array
RegulationRegulated_by_geneWBGene00001996
Associated_withLife_stageWBls:0000003