WormBase Tree Display for Gene: WBGene00019963
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| WBGene00019963 | SMap | S_parent | Sequence | R08E5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rips-1 | Person_evidence | WBPerson2857 | |||||
| Sequence_name | R08E5.3 | ||||||||
| Molecular_name | R08E5.3 | ||||||||
| R08E5.3.1 | |||||||||
| CE12576 | |||||||||
| Other_name | CELE_R08E5.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | rips-1 | ||||||||
| DB_info | Database | AceView | gene | 5E251 | |||||
| WormQTL | gene | WBGene00019963 | |||||||
| WormFlux | gene | WBGene00019963 | |||||||
| NDB | locus_tag | CELE_R08E5.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019963|UniProtKB=O01593 | |||||||
| family | PTHR45581 | ||||||||
| NCBI | gene | 178795 | |||||||
| RefSeq | protein | NM_071644.8 | |||||||
| TREEFAM | TREEFAM_ID | TF314672 | |||||||
| TrEMBL | UniProtAcc | O01593 | |||||||
| UniProt_GCRP | UniProtAcc | O01593 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Dec 2021 11:50:30 | WBPerson1983 | Name_change | CGC_name | rips-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rips | ||||||||
| Allele (124) | |||||||||
| Possibly_affected_by (13) | |||||||||
| Strain | WBStrain00052775 | ||||||||
| WBStrain00055595 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00025126 | ||||||||
| 00025127 | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00019675 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019961 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019968 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000765 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008743 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015450 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018811 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019198 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022781 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable methyltransferase activity. Predicted to be involved in methylation. Expressed in hypodermis and intestine. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R08E5.3 | |||||||
| Corresponding_transcript | R08E5.3.1 | ||||||||
| Other_sequence (38) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00017594 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00116064 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117203 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051554 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034753 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3370 | ||||||||
| Expr3385 | |||||||||
| Expr16227 | |||||||||
| Expr1023341 | |||||||||
| Expr1038673 | |||||||||
| Expr1155232 | |||||||||
| Expr2005497 | |||||||||
| Expr2023717 | |||||||||
| Drives_construct | WBCnstr00011367 | ||||||||
| WBCnstr00025463 | |||||||||
| WBCnstr00042841 | |||||||||
| Construct_product | WBCnstr00025463 | ||||||||
| WBCnstr00042841 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (353) | |||||||||
| Interaction | WBInteraction000281151 | ||||||||
| WBInteraction000375584 | |||||||||
| WBInteraction000564178 | |||||||||
| WBInteraction000570829 | |||||||||
| WBInteraction000570907 | |||||||||
| WBInteraction000586436 | |||||||||
| Map_info | Map | V | Position | -7.99967 | |||||
| Positive | Positive_clone | R08E5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026629 | ||||||||
| WBPaper00063962 | |||||||||
| WBPaper00064568 | |||||||||
| WBPaper00065331 | |||||||||
| WBPaper00066133 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
