WormBase Tree Display for Gene: WBGene00001682
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| WBGene00001682 | SMap | S_parent | Sequence | F08B6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gpc-2 | Person_evidence | WBPerson490 | |||||
| Sequence_name | F08B6.2 | ||||||||
| Molecular_name | F08B6.2 | ||||||||
| F08B6.2.1 | |||||||||
| CE20656 | |||||||||
| Other_name | CELE_F08B6.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | gpc-2 | ||||||||
| DB_info | Database | AceView | gene | 1H335 | |||||
| WormQTL | gene | WBGene00001682 | |||||||
| WormFlux | gene | WBGene00001682 | |||||||
| NDB | locus_tag | CELE_F08B6.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001682|UniProtKB=G5ECT6 | |||||||
| family | PTHR15936 | ||||||||
| NCBI | gene | 172396 | |||||||
| RefSeq | protein | NM_059534.9 | |||||||
| TrEMBL | UniProtAcc | G5ECT6 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECT6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gpc | ||||||||
| Allele | WBVar00336868 | ||||||||
| WBVar00645701 | |||||||||
| WBVar00645702 | |||||||||
| WBVar00645703 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01499054 | |||||||||
| WBVar00296739 | |||||||||
| WBVar01498959 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00012456 | ||||||||
| 00012457 | |||||||||
| 00012458 | |||||||||
| 00109308 | |||||||||
| 00109309 | |||||||||
| 00109310 | |||||||||
| 00109311 | |||||||||
| 00109312 | |||||||||
| Ortholog (14) | |||||||||
| Paralog | WBGene00001681 | ||||||||
| Structured_description | Concise_description | gpc-2 encodes one of two C. elegans heterotrimeric G protein gamma subunits; gpc-2 is required, along with its partner GPB-1, a G protein beta subunit, for proper mitotic spindle positioning and orientation during early embryonic cell divisions; to date, GPC-2 expression has been reported in electrically excitable cells (all neurons and muscles). | Paper_evidence | WBPaper00004576 | |||||
| WBPaper00005150 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Expressed in muscle cell and neurons. Is an ortholog of human GNG13 (G protein subunit gamma 13). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F08B6.2 | |||||||
| Corresponding_transcript | F08B6.2.1 | ||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf643399 | ||||||||
| WBsf976750 | |||||||||
| WBsf983992 | |||||||||
| WBsf1009988 | |||||||||
| WBsf217884 | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr1830 | ||||||||
| Expr4698 | |||||||||
| Expr1018561 | |||||||||
| Expr1031002 | |||||||||
| Expr1147948 | |||||||||
| Expr2012202 | |||||||||
| Expr2030438 | |||||||||
| Drives_construct | WBCnstr00001703 | ||||||||
| WBCnstr00012179 | |||||||||
| WBCnstr00036774 | |||||||||
| Construct_product | WBCnstr00013346 | ||||||||
| WBCnstr00036774 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (183) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | I | Position | 1.31097 | Error | 0.000909 | |||
| Positive | Positive_clone | F08B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (20) | |||||||||
| Remark | sdm changed subseq from e to 2 by inference of pfam match. 12/99 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
