WormBase Tree Display for Gene: WBGene00001682
expand all nodes | collapse all nodes | view schema
WBGene00001682 | SMap | S_parent | Sequence | F08B6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | gpc-2 | Person_evidence | WBPerson490 | |||||
Sequence_name | F08B6.2 | ||||||||
Molecular_name | F08B6.2 | ||||||||
F08B6.2.1 | |||||||||
CE20656 | |||||||||
Other_name | CELE_F08B6.2 | Accession_evidence | NDB | BX284601 | |||||
Public_name | gpc-2 | ||||||||
DB_info | Database | AceView | gene | 1H335 | |||||
WormQTL | gene | WBGene00001682 | |||||||
WormFlux | gene | WBGene00001682 | |||||||
NDB | locus_tag | CELE_F08B6.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001682|UniProtKB=G5ECT6 | |||||||
family | PTHR15936 | ||||||||
NCBI | gene | 172396 | |||||||
RefSeq | protein | NM_059534.9 | |||||||
TrEMBL | UniProtAcc | G5ECT6 | |||||||
UniProt_GCRP | UniProtAcc | G5ECT6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gpc | ||||||||
Allele | WBVar00336868 | ||||||||
WBVar00645701 | |||||||||
WBVar00645702 | |||||||||
WBVar00645703 | |||||||||
WBVar01499786 | |||||||||
WBVar01499054 | |||||||||
WBVar00296739 | |||||||||
WBVar01498959 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00012456 | ||||||||
00012457 | |||||||||
00012458 | |||||||||
00109308 | |||||||||
00109309 | |||||||||
00109310 | |||||||||
00109311 | |||||||||
00109312 | |||||||||
Ortholog (14) | |||||||||
Paralog | WBGene00001681 | ||||||||
Structured_description | Concise_description | gpc-2 encodes one of two C. elegans heterotrimeric G protein gamma subunits; gpc-2 is required, along with its partner GPB-1, a G protein beta subunit, for proper mitotic spindle positioning and orientation during early embryonic cell divisions; to date, GPC-2 expression has been reported in electrically excitable cells (all neurons and muscles). | Paper_evidence | WBPaper00004576 | |||||
WBPaper00005150 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Expressed in muscle cell and neurons. Is an ortholog of human GNG13 (G protein subunit gamma 13). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F08B6.2 | |||||||
Corresponding_transcript | F08B6.2.1 | ||||||||
Other_sequence (25) | |||||||||
Associated_feature | WBsf643399 | ||||||||
WBsf976750 | |||||||||
WBsf983992 | |||||||||
WBsf1009988 | |||||||||
WBsf217884 | |||||||||
Experimental_info | RNAi_result (18) | ||||||||
Expr_pattern | Expr1830 | ||||||||
Expr4698 | |||||||||
Expr1018561 | |||||||||
Expr1031002 | |||||||||
Expr1147948 | |||||||||
Expr2012202 | |||||||||
Expr2030438 | |||||||||
Drives_construct | WBCnstr00001703 | ||||||||
WBCnstr00012179 | |||||||||
WBCnstr00036774 | |||||||||
Construct_product | WBCnstr00013346 | ||||||||
WBCnstr00036774 | |||||||||
Microarray_results (22) | |||||||||
Expression_cluster (183) | |||||||||
Interaction (18) | |||||||||
Map_info | Map | I | Position | 1.31097 | Error | 0.000909 | |||
Positive | Positive_clone | F08B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003465 | ||||||||
WBPaper00004366 | |||||||||
WBPaper00005423 | |||||||||
WBPaper00006395 | |||||||||
WBPaper00015719 | |||||||||
WBPaper00017683 | |||||||||
WBPaper00023171 | |||||||||
WBPaper00024449 | |||||||||
WBPaper00025141 | |||||||||
WBPaper00029025 | |||||||||
WBPaper00029109 | |||||||||
WBPaper00032878 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00040144 | |||||||||
WBPaper00041169 | |||||||||
WBPaper00047791 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00055830 | |||||||||
WBPaper00061459 | |||||||||
WBPaper00064339 | |||||||||
Remark | sdm changed subseq from e to 2 by inference of pfam match. 12/99 | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |