WormBase Tree Display for Gene: WBGene00009964
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| WBGene00009964 | SMap | S_parent | Sequence | F53B6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fip-6 | Person_evidence | WBPerson168 | |||||
| Sequence_name | F53B6.9 | ||||||||
| Molecular_name | F53B6.9 | ||||||||
| F53B6.9.1 | |||||||||
| CE30539 | |||||||||
| Other_name | CELE_F53B6.9 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | fip-6 | ||||||||
| DB_info | Database | AceView | gene | 1J520 | |||||
| WormQTL | gene | WBGene00009964 | |||||||
| WormFlux | gene | WBGene00009964 | |||||||
| NDB | locus_tag | CELE_F53B6.9 | |||||||
| NCBI | gene | 172707 | |||||||
| RefSeq | protein | NM_170908.8 | |||||||
| TrEMBL | UniProtAcc | Q8T3D9 | |||||||
| UniProt_GCRP | UniProtAcc | Q8T3D9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 03 Apr 2007 10:48:52 | WBPerson2970 | Name_change | CGC_name | fip-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fip | ||||||||
| Allele (14) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00033351 | Caenorhabditis briggsae | From_analysis | OMA | |||||
| WBGene00059975 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00161728 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| chrI_pilon.g1705 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00077704 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Automated_description | Enriched in AWA; germline precursor cell; and hypodermis based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eighteen chemicals including Nitric Oxide; methylmercury hydroxide; and rotenone based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53B6.9 | |||||||
| Corresponding_transcript | F53B6.9.1 | ||||||||
| Other_sequence | CBC04725_1 | ||||||||
| CSC00712_1 | |||||||||
| FD515695.1 | |||||||||
| FD515646.1 | |||||||||
| Associated_feature | WBsf649427 | ||||||||
| WBsf984543 | |||||||||
| WBsf1010295 | |||||||||
| WBsf220009 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048094 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1028180 | ||||||||
| Expr1151904 | |||||||||
| Expr2011768 | |||||||||
| Expr2030005 | |||||||||
| Drives_construct | WBCnstr00031781 | ||||||||
| Construct_product | WBCnstr00031781 | ||||||||
| Microarray_results | A_12_P104889 | ||||||||
| GPL14144_F53B6.9_106-165_0.945_1_A | |||||||||
| GPL19516_CGZ0023384 | |||||||||
| GPL21109_F53B6.9 | |||||||||
| GPL8304_CE_WBGene00009964_A | |||||||||
| GPL8673_F53B6_9P00042 | |||||||||
| GPL8673_F53B6_9P00108 | |||||||||
| GPL8673_F53B6_9P00160 | |||||||||
| GPL9450_F53B6.9 | |||||||||
| cea2.p.11393 | |||||||||
| Expression_cluster (205) | |||||||||
| Map_info | Map | I | Position | 3.32852 | |||||
| Positive | Positive_clone | F53B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00061421 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
