WormBase Tree Display for Gene: WBGene00003038
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WBGene00003038 | SMap | S_parent | Sequence | ZK673 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | lin-56 | Paper_evidence | WBPaper00037906 | |||||
Person_evidence | WBPerson261 | ||||||||
Sequence_name | ZK673.3 | ||||||||
Molecular_name | ZK673.3 | ||||||||
ZK673.3.1 | |||||||||
CE16743 | |||||||||
Other_name | CELE_ZK673.3 | Accession_evidence | NDB | BX284602 | |||||
Public_name | lin-56 | ||||||||
DB_info | Database | AceView | gene | 2K741 | |||||
WormFlux | gene | WBGene00003038 | |||||||
NDB | locus_tag | CELE_ZK673.3 | |||||||
NCBI | gene | 174609 | |||||||
RefSeq | protein | NM_063845.5 | |||||||
SwissProt | UniProtAcc | Q09377 | |||||||
TREEFAM | TREEFAM_ID | TF343895 | |||||||
UniProt_GCRP | UniProtAcc | Q09377 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 18 Jan 2011 10:26:31 | WBPerson2970 | Event | Acquires_merge | WBGene00014059 | ||||
Name_change | Sequence_name | ZK673.3 | |||||||
Acquires_merge | WBGene00014059 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lin | ||||||||
Allele (36) | |||||||||
Strain | WBStrain00027347 | ||||||||
WBStrain00027402 | |||||||||
WBStrain00027406 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00053610 | ||||||||
00053611 | |||||||||
00053612 | |||||||||
00053613 | |||||||||
00053614 | |||||||||
00053615 | |||||||||
00053616 | |||||||||
00053617 | |||||||||
00053618 | |||||||||
Contained_in_operon | CEOP2488 | ||||||||
Ortholog | WBGene00053373 | Caenorhabditis remanei | From_analysis | TreeFam | |||||
WBGene00158352 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
CSP29.g17361 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP32.g5686 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP39.g11553 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP39.g6649 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g16071 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00141.g5463 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
chrII_pilon.g5730 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog | WBGene00014060 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Structured_description | Concise_description | lin-56 encodes a novel protein that contains a THAP zinc-finger-like domain; lin-56, along with lin-15A, which also encodes a THAP domain-containing protein, functions as a transcriptional regulator to negatively regulate expression of LIN-3/EGF and, in turn, Ras-mediated vulval development; LIN-56 is expressed ubiquitously in somatic cells from embryogenesis through adulthood and localizes to nuclei; LIN-56 and LIN-15A physically interact in a yeast two-hybrid assay and are mutually required for normal patterns of expression. | Paper_evidence | WBPaper00005861 | |||||
WBPaper00026688 | |||||||||
WBPaper00037906 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 21 Mar 2011 00:00:00 | ||||||||
Automated_description | Involved in several processes, including protein localization to nucleus; protein stabilization; and vulval development. Located in nucleus. Expressed in somatic cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK673.3 | |||||||
Corresponding_transcript | ZK673.3.1 | ||||||||
Other_sequence | CBC01728_1 | ||||||||
Associated_feature | WBsf644610 | ||||||||
WBsf222016 | |||||||||
Experimental_info | RNAi_result | WBRNAi00059644 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00061657 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00000884 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00038411 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062497 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9238 | ||||||||
Expr1031424 | |||||||||
Expr1163054 | |||||||||
Expr2013194 | |||||||||
Expr2031426 | |||||||||
Drives_construct | WBCnstr00036268 | ||||||||
Construct_product | WBCnstr00036268 | ||||||||
Antibody | WBAntibody00001245 | ||||||||
WBAntibody00002218 | |||||||||
Microarray_results (20) | |||||||||
Expression_cluster (100) | |||||||||
Interaction (19) | |||||||||
Map_info | Map | II | Position | 2.57334 | Error | 0.00813 | |||
Positive | Positive_clone | ZK673 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4103 | |||||||
4123 | |||||||||
4124 | |||||||||
Reference (20) | |||||||||
Method | Gene |