WormBase Tree Display for Gene: WBGene00000558
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WBGene00000558 | Evidence | Person_evidence | WBPerson168 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | R09B5 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | cnc-4 | Person_evidence | WBPerson168 | |||||
Sequence_name | R09B5.9 | ||||||||
Molecular_name | R09B5.9 | ||||||||
R09B5.9.1 | |||||||||
CE12634 | |||||||||
Other_name | CELE_R09B5.9 | Accession_evidence | NDB | BX284605 | |||||
Public_name | cnc-4 | ||||||||
DB_info | Database | AceView | gene | 5B925 | |||||
WormQTL | gene | WBGene00000558 | |||||||
WormFlux | gene | WBGene00000558 | |||||||
NDB | locus_tag | CELE_R09B5.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000558|UniProtKB=O44613 | |||||||
family | PTHR22552 | ||||||||
NCBI | gene | 178635 | |||||||
RefSeq | protein | NM_071015.7 | |||||||
TrEMBL | UniProtAcc | O44613 | |||||||
UniProt_GCRP | UniProtAcc | O44613 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cnc | ||||||||
Allele (20) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00032947 | ||||||||
00032948 | |||||||||
00032949 | |||||||||
Ortholog | WBGene00045470 | Caenorhabditis briggsae | Person_evidence | WBPerson2531 | |||||
WBPerson168 | |||||||||
WBGene00077432 | Caenorhabditis remanei | From_analysis | OMA | ||||||
WBGene00103511 | Pristionchus pacificus | From_analysis | OMA | ||||||
WBGene00156990 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
WBGene00191876 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
chrV_pilon.g13221 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | cnc-4 encodes one of eleven C. elegans caenacin peptides; cnc-4 expression is strongly induced after infection by the fungus Drechmeria coniospora, suggesting that it functions as a secreted antimicrobial peptide in the innate immune response. | Paper_evidence | WBPaper00006488 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 04 Jan 2010 00:00:00 | ||||||||
Automated_description | Involved in defense response to fungus and innate immune response. Predicted to be located in membrane. Expressed in hypodermis; intestine; and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R09B5.9 | |||||||
Corresponding_transcript | R09B5.9.1 | ||||||||
Other_sequence (15) | |||||||||
Associated_feature | WBsf646663 | ||||||||
WBsf231407 | |||||||||
WBsf231408 | |||||||||
Experimental_info | RNAi_result | WBRNAi00051603 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00034775 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017635 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr8216 | ||||||||
Expr10690 | |||||||||
Expr1025430 | |||||||||
Expr1030337 | |||||||||
Expr1155277 | |||||||||
Expr2010265 | |||||||||
Expr2028507 | |||||||||
Drives_construct | WBCnstr00017463 | ||||||||
WBCnstr00037453 | |||||||||
Construct_product | WBCnstr00037453 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (327) | |||||||||
Interaction | WBInteraction000364416 | ||||||||
WBInteraction000503904 | |||||||||
WBInteraction000504872 | |||||||||
WBInteraction000504873 | |||||||||
WBInteraction000504951 | |||||||||
WBInteraction000543093 | |||||||||
WBInteraction000543094 | |||||||||
WBInteraction000543095 | |||||||||
Map_info | Map | V | Position | -18.9242 | Error | 0.001753 | |||
Positive | Positive_clone | R09B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (17) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |