WormBase Tree Display for Gene: WBGene00011880
expand all nodes | collapse all nodes | view schema
| WBGene00011880 | SMap | S_parent | Sequence | T21B6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | T21B6.3 | |||||||
| Molecular_name | T21B6.3 | ||||||||
| T21B6.3.1 | |||||||||
| CE31621 | |||||||||
| Other_name | CELE_T21B6.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | T21B6.3 | ||||||||
| DB_info | Database | AceView | gene | XL564 | |||||
| WormQTL | gene | WBGene00011880 | |||||||
| WormFlux | gene | WBGene00011880 | |||||||
| NDB | locus_tag | CELE_T21B6.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011880|UniProtKB=Q22631 | |||||||
| family | PTHR22906 | ||||||||
| NCBI | gene | 181284 | |||||||
| RefSeq | protein | NM_077428.6 | |||||||
| TREEFAM | TREEFAM_ID | TF317240 | |||||||
| TrEMBL | UniProtAcc | Q22631 | |||||||
| UniProt_GCRP | UniProtAcc | Q22631 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (75) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (25) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in muscle cell based on tiling array; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by twenty-two chemicals including 1-methylnicotinamide; bisphenol A; and Zidovudine based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: Thrombospondin type-1 (TSP1) repeat; Thrombospondin type-1 (TSP1) repeat superfamily; Thrombospondin type 1 domain; and PAN/Apple domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T21B6.3 | |||||||
| Corresponding_CDS_history | T21B6.3:wp83 | ||||||||
| Corresponding_transcript | T21B6.3.1 | ||||||||
| Other_sequence (129) | |||||||||
| Associated_feature | WBsf654377 | ||||||||
| WBsf1006862 | |||||||||
| WBsf1006863 | |||||||||
| WBsf1023791 | |||||||||
| WBsf237920 | |||||||||
| WBsf237921 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00053705 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018959 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021265 | ||||||||
| Expr1035234 | |||||||||
| Expr1157257 | |||||||||
| Expr2006311 | |||||||||
| Expr2024532 | |||||||||
| Drives_construct | WBCnstr00030314 | ||||||||
| Construct_product | WBCnstr00030314 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (203) | |||||||||
| Interaction (80) | |||||||||
| Map_info | Positive | Positive_clone | T21B6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | 2.71591 | |||||||
| Reference | WBPaper00055090 | ||||||||
| Method | Gene |
