WormBase Tree Display for Gene: WBGene00011880

WBGene00011880 SMap: S_parent: Sequence: T21B6
  Identity: Version: 1
    Name: Sequence_name: T21B6.3
      Molecular_name: T21B6.3
        T21B6.3.1
        CE31621
      Other_name: CELE_T21B6.3 Accession_evidence: NDB BX284606
      Public_name: T21B6.3
    DB_info: Database: AceView gene XL564
        WormQTL gene WBGene00011880
        WormFlux gene WBGene00011880
        NDB locus_tag CELE_T21B6.3
        Panther gene CAEEL|WormBase=WBGene00011880|UniProtKB=Q22631
          family PTHR22906
        NCBI gene 181284
        RefSeq protein NM_077428.6
        TREEFAM TREEFAM_ID TF317240
        TrEMBL UniProtAcc Q22631
        UniProt_GCRP UniProtAcc Q22631
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (75)
    RNASeq_FPKM (74)
    Ortholog: WBGene00089650 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00037145 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00058385 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00154265 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00131443 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00226139 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g14173 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g12166 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14432 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15925 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g25228 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2117 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13784 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2759 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Cang_2012_03_13_00019.g1191 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-T21B6.3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13838 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00025.g1476 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01227 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023675 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01094 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g19198 Panagrellus redivivus From_analysis: WormBase-Compara
      chrX_pilon.g19975 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00240165 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00294489 Trichuris muris From_analysis: WormBase-Compara
    Paralog (12)
    Structured_description: Concise_description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). Paper_evidence: WBPaper00005068
            WBPaper00012788
            WBPaper00012830
            WBPaper00012882
            WBPaper00012897
            WBPaper00013003
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in muscle cell based on tiling array; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by twenty-two chemicals including 1-methylnicotinamide; bisphenol A; and Zidovudine based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: Thrombospondin type-1 (TSP1) repeat; Thrombospondin type-1 (TSP1) repeat superfamily; Thrombospondin type 1 domain; and PAN/Apple domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T21B6.3
    Corresponding_CDS_history: T21B6.3:wp83
    Corresponding_transcript: T21B6.3.1
    Other_sequence (129)
    Associated_feature: WBsf654377
      WBsf1006862
      WBsf1006863
      WBsf1023791
      WBsf237920
      WBsf237921
  Experimental_info: RNAi_result: WBRNAi00053705 Inferred_automatically: RNAi_primary
      WBRNAi00018959 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021265
      Expr1035234
      Expr1157257
      Expr2006311
      Expr2024532
    Drives_construct: WBCnstr00030314
    Construct_product: WBCnstr00030314
    Microarray_results (19)
    Expression_cluster (203)
    Interaction (80)
  Map_info: Positive: Positive_clone: T21B6 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X 2.71591
  Reference: WBPaper00055090
  Method: Gene