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WormBase Tree Display for Gene: WBGene00010877

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Name Class

WBGene00010877SMapS_parentSequenceM05D6
IdentityVersion2
NameCGC_namelact-4Person_evidenceWBPerson168
Sequence_nameM05D6.4
Molecular_nameM05D6.4
M05D6.4.1
CE03502
Other_nameCELE_M05D6.4Accession_evidenceNDBBX284602
Public_namelact-4
DB_infoDatabaseAceViewgene2I768
WormQTLgeneWBGene00010877
WormFluxgeneWBGene00010877
NDBlocus_tagCELE_M05D6.4
PanthergeneCAEEL|WormBase=WBGene00010877|UniProtKB=Q21523
familyPTHR43319
NCBIgene174356
RefSeqproteinNM_063389.8
TREEFAMTREEFAM_IDTF315291
TrEMBLUniProtAccQ21523
UniProt_GCRPUniProtAccQ21523
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
213 Apr 2007 16:02:30WBPerson2970Name_changeCGC_namelact-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlact
Allele (43)
StrainWBStrain00032924
RNASeq_FPKM (74)
Contained_in_operonCEOP2352
Ortholog (23)
ParalogWBGene00007358Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00018523Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00014164Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00016355Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010897Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000767Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008410Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021315Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionlact-4 encodes a beta-lactamase domain-containing protein that contains predicted signal and transmembrane sequences in its N terminus.Curator_confirmedWBPerson1843
Date_last_updated18 Dec 2007 00:00:00
Automated_descriptionEnriched in several structures, including ABalppppppa; ABpraaapppa; coelomocyte; muscle cell; and neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eighteen chemicals including Tunicamycin; mianserin; and D-glucose based on microarray; RNA-seq; and proteomic studies. Is predicted to encode a protein with the following domains: Beta-lactamase-related; Beta-lactamase; and Beta-lactamase/transpeptidase-like.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSM05D6.4
Corresponding_transcriptM05D6.4.1
Other_sequence (32)
Associated_featureWBsf223503
WBsf223504
Experimental_infoRNAi_resultWBRNAi00034439Inferred_automaticallyRNAi_primary
WBRNAi00017193Inferred_automaticallyRNAi_primary
WBRNAi00089125Inferred_automaticallyRNAi_primary
WBRNAi00050933Inferred_automaticallyRNAi_primary
Expr_patternExpr1012942
Expr1034769
Expr1154631
Expr2012996
Expr2031228
Drives_constructWBCnstr00031088
Construct_productWBCnstr00031088
Microarray_results (19)
Expression_cluster (197)
Interaction (44)
Map_infoMapIIPosition0.813482Error0.000327
PositivePositive_cloneM05D6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00061938
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene