WormBase Tree Display for Gene: WBGene00010897

WBGene00010897 SMap: S_parent: Sequence: M28
  Identity: Version: 2
    Name: CGC_name: lact-3 Person_evidence: WBPerson168
      Sequence_name: M28.6
      Molecular_name: M28.6
        M28.6.1
        CE02284
      Other_name: CELE_M28.6 Accession_evidence: NDB BX284602
      Public_name: lact-3
    DB_info: Database: AceView gene 2K944
        WormQTL gene WBGene00010897
        WormFlux gene WBGene00010897
        NDB locus_tag CELE_M28.6
        Panther gene CAEEL|WormBase=WBGene00010897|UniProtKB=Q21569
          family PTHR43319
        NCBI gene 174644
        RefSeq protein NM_063898.5
        TREEFAM TREEFAM_ID TF315291
        TrEMBL UniProtAcc Q21569
        UniProt_GCRP UniProtAcc Q21569
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Apr 2007 16:02:30 WBPerson2970 Name_change: CGC_name: lact-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lact
    Allele (95)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP2500
    Ortholog (28)
    Paralog: WBGene00007358 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00010877 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018523 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00016355 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00014164 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000767 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008410 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00021315 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: lact-3 encodes a beta-lactamase domain-containing protein that contains a predicted signal sequence; loss of lact-3 activity via RNAi has been reported to result in reduced fat content. Paper_evidence: WBPaper00005655
          Curator_confirmed: WBPerson1843
          Date_last_updated: 18 Dec 2007 00:00:00
      Automated_description: Enriched in MSpaaaaa; OLL; PVD; and intestine based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by eleven chemicals including aldicarb; Cry5B; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Beta-lactamase-related; Beta-lactamase; and Beta-lactamase/transpeptidase-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: M28.6
    Corresponding_transcript: M28.6.1
    Other_sequence (47)
    Associated_feature: WBsf665230
      WBsf665269
      WBsf666045
      WBsf981273
      WBsf223824
  Experimental_info: RNAi_result: WBRNAi00051023 Inferred_automatically: RNAi_primary
      WBRNAi00023280 Inferred_automatically: RNAi_primary
      WBRNAi00017251 Inferred_automatically: RNAi_primary
      WBRNAi00002061 Inferred_automatically: RNAi_primary
      WBRNAi00023791 Inferred_automatically: RNAi_primary
      WBRNAi00089126 Inferred_automatically: RNAi_primary
      WBRNAi00081584 Inferred_automatically: RNAi_primary
      WBRNAi00034477 Inferred_automatically: RNAi_primary
      WBRNAi00023543 Inferred_automatically: RNAi_primary
      WBRNAi00024078 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021707
      Expr1034780
      Expr1154737
      Expr2012995
      Expr2031227
    Drives_construct: WBCnstr00031070
    Construct_product: WBCnstr00031070
    Microarray_results (19)
    Expression_cluster (174)
    Interaction: WBInteraction000227703
      WBInteraction000541092
      WBInteraction000541095
      WBInteraction000570967
      WBInteraction000571015
  Map_info: Map: II Position: 3.12275 Error: 0.000116
    Positive: Positive_clone: M28 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene