WormBase Tree Display for Gene: WBGene00017535
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| WBGene00017535 | SMap | S_parent | Sequence | F17A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | atf-8 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F17A9.3 | ||||||||
| Molecular_name | F17A9.3 | ||||||||
| F17A9.3.1 | |||||||||
| CE19799 | |||||||||
| Other_name | CELE_F17A9.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | atf-8 | ||||||||
| DB_info | Database | AceView | gene | 5G587 | |||||
| WormQTL | gene | WBGene00017535 | |||||||
| WormFlux | gene | WBGene00017535 | |||||||
| NDB | locus_tag | CELE_F17A9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017535|UniProtKB=O16213 | |||||||
| family | PTHR11988 | ||||||||
| NCBI | gene | 178998 | |||||||
| RefSeq | protein | NM_072175.5 | |||||||
| TREEFAM | TREEFAM_ID | TF315869 | |||||||
| TrEMBL | UniProtAcc | O16213 | |||||||
| UniProt_GCRP | UniProtAcc | O16213 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 13 Oct 2011 15:59:42 | WBPerson2970 | Name_change | CGC_name | atf-8 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | atf | ||||||||
| Allele (43) | |||||||||
| Strain | WBStrain00003559 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00027458 | ||||||||
| 00027459 | |||||||||
| 00027460 | |||||||||
| 00027461 | |||||||||
| 00027462 | |||||||||
| 00027463 | |||||||||
| 00122880 | |||||||||
| 00122881 | |||||||||
| 00122882 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00000220 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00000469 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011130 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013100 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in vulva. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F17A9.3 | |||||||
| Corresponding_transcript | F17A9.3.1 | ||||||||
| Other_sequence | OVC09060_1 | ||||||||
| Dviv_isotig07246 | |||||||||
| SRC00216_1 | |||||||||
| ES562163.1 | |||||||||
| CJC02287_1 | |||||||||
| BF918179.1 | |||||||||
| JI177243.1 | |||||||||
| FC814748.1 | |||||||||
| TSC02177 | |||||||||
| FC809461.1 | |||||||||
| Associated_feature | WBsf646853 | ||||||||
| WBsf655076 | |||||||||
| WBsf978425 | |||||||||
| WBsf1000170 | |||||||||
| WBsf1000171 | |||||||||
| WBsf1000172 | |||||||||
| WBsf1019734 | |||||||||
| WBsf231838 | |||||||||
| Transcription_factor | WBTranscriptionFactor000412 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00093020 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031059 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044857 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5780 | ||||||||
| Expr7509 | |||||||||
| Expr1024751 | |||||||||
| Expr1037529 | |||||||||
| Expr1148821 | |||||||||
| Expr2009483 | |||||||||
| Expr2027720 | |||||||||
| Drives_construct | WBCnstr00004011 | ||||||||
| WBCnstr00012654 | |||||||||
| WBCnstr00027227 | |||||||||
| Construct_product | WBCnstr00027227 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (237) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | V | Position | -0.340078 | Error | 0.005816 | |||
| Positive | Positive_clone | F17A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056796 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
