WormBase Tree Display for Gene: WBGene00017535
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WBGene00017535 | SMap | S_parent | Sequence | F17A9 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | atf-8 | Person_evidence | WBPerson260 | |||
Sequence_name | F17A9.3 | ||||||
Molecular_name | F17A9.3 | ||||||
F17A9.3.1 | |||||||
CE19799 | |||||||
Other_name | CELE_F17A9.3 | Accession_evidence | NDB | BX284605 | |||
Public_name | atf-8 | ||||||
DB_info | Database | AceView | gene | 5G587 | |||
WormQTL | gene | WBGene00017535 | |||||
WormFlux | gene | WBGene00017535 | |||||
NDB | locus_tag | CELE_F17A9.3 | |||||
Panther | gene | CAEEL|WormBase=WBGene00017535|UniProtKB=O16213 | |||||
family | PTHR11988 | ||||||
NCBI | gene | 178998 | |||||
RefSeq | protein | NM_072175.5 | |||||
TREEFAM | TREEFAM_ID | TF315869 | |||||
TrEMBL | UniProtAcc | O16213 | |||||
UniProt_GCRP | UniProtAcc | O16213 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | atf | ||||||
Allele (43) | |||||||
Strain | WBStrain00003559 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00027458 | ||||||
00027459 | |||||||
00027460 | |||||||
00027461 | |||||||
00027462 | |||||||
00027463 | |||||||
00122880 | |||||||
00122881 | |||||||
00122882 | |||||||
Ortholog (31) | |||||||
Paralog | WBGene00000220 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00000469 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00011130 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00013100 | Caenorhabditis elegans | From_analysis | Panther | ||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in vulva. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F17A9.3 | |||||
Corresponding_transcript | F17A9.3.1 | ||||||
Other_sequence | OVC09060_1 | ||||||
Dviv_isotig07246 | |||||||
SRC00216_1 | |||||||
ES562163.1 | |||||||
CJC02287_1 | |||||||
BF918179.1 | |||||||
JI177243.1 | |||||||
FC814748.1 | |||||||
TSC02177 | |||||||
FC809461.1 | |||||||
Associated_feature | WBsf646853 | ||||||
WBsf655076 | |||||||
WBsf978425 | |||||||
WBsf1000170 | |||||||
WBsf1000171 | |||||||
WBsf1000172 | |||||||
WBsf1019734 | |||||||
WBsf231838 | |||||||
Transcription_factor | WBTranscriptionFactor000412 | ||||||
Experimental_info | RNAi_result | WBRNAi00093020 | Inferred_automatically | RNAi_primary | |||
WBRNAi00031059 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00044857 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr5780 | ||||||
Expr7509 | |||||||
Expr1024751 | |||||||
Expr1037529 | |||||||
Expr1148821 | |||||||
Expr2009483 | |||||||
Expr2027720 | |||||||
Drives_construct | WBCnstr00004011 | ||||||
WBCnstr00012654 | |||||||
WBCnstr00027227 | |||||||
Construct_product | WBCnstr00027227 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (237) | |||||||
Interaction (13) | |||||||
Map_info | Map | V | Position | -0.340078 | Error | 0.005816 | |
Positive | Positive_clone | F17A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00027309 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00056796 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |