WormBase Tree Display for Gene: WBGene00017535
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WBGene00017535 | SMap | S_parent | Sequence | F17A9 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | atf-8 | Person_evidence | WBPerson260 | |||||
Sequence_name | F17A9.3 | ||||||||
Molecular_name | F17A9.3 | ||||||||
F17A9.3.1 | |||||||||
CE19799 | |||||||||
Other_name | CELE_F17A9.3 | Accession_evidence | NDB | BX284605 | |||||
Public_name | atf-8 | ||||||||
DB_info | Database | AceView | gene | 5G587 | |||||
WormQTL | gene | WBGene00017535 | |||||||
WormFlux | gene | WBGene00017535 | |||||||
NDB | locus_tag | CELE_F17A9.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00017535|UniProtKB=O16213 | |||||||
family | PTHR11988 | ||||||||
NCBI | gene | 178998 | |||||||
RefSeq | protein | NM_072175.5 | |||||||
TREEFAM | TREEFAM_ID | TF315869 | |||||||
TrEMBL | UniProtAcc | O16213 | |||||||
UniProt_GCRP | UniProtAcc | O16213 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 13 Oct 2011 15:59:42 | WBPerson2970 | Name_change | CGC_name | atf-8 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | atf | ||||||||
Allele (43) | |||||||||
Strain | WBStrain00003559 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00027458 | ||||||||
00027459 | |||||||||
00027460 | |||||||||
00027461 | |||||||||
00027462 | |||||||||
00027463 | |||||||||
00122880 | |||||||||
00122881 | |||||||||
00122882 | |||||||||
Ortholog (31) | |||||||||
Paralog | WBGene00000220 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WBGene00000469 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00011130 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00013100 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in vulva. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F17A9.3 | |||||||
Corresponding_transcript | F17A9.3.1 | ||||||||
Other_sequence | OVC09060_1 | ||||||||
Dviv_isotig07246 | |||||||||
SRC00216_1 | |||||||||
ES562163.1 | |||||||||
CJC02287_1 | |||||||||
BF918179.1 | |||||||||
JI177243.1 | |||||||||
FC814748.1 | |||||||||
TSC02177 | |||||||||
FC809461.1 | |||||||||
Associated_feature (8) | |||||||||
Transcription_factor | WBTranscriptionFactor000412 | ||||||||
Experimental_info | RNAi_result | WBRNAi00093020 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00031059 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00044857 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr5780 | ||||||||
Expr7509 | |||||||||
Expr1024751 | |||||||||
Expr1037529 | |||||||||
Expr1148821 | |||||||||
Expr2009483 | |||||||||
Expr2027720 | |||||||||
Drives_construct | WBCnstr00004011 | ||||||||
WBCnstr00012654 | |||||||||
WBCnstr00027227 | |||||||||
Construct_product | WBCnstr00027227 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (237) | |||||||||
Interaction (13) | |||||||||
Map_info | Map | V | Position | -0.340078 | Error | 0.005816 | |||
Positive | Positive_clone | F17A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027309 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00056796 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |