WormBase Tree Display for Gene: WBGene00044019
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| WBGene00044019 | SMap | S_parent | Sequence | C55A6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C55A6.12 | |||||||
| Molecular_name | C55A6.12a | ||||||||
| C55A6.12a.1 | |||||||||
| CE42753 | |||||||||
| C55A6.12b | |||||||||
| CE48367 | |||||||||
| C55A6.12b.1 | |||||||||
| Other_name | CELE_C55A6.12 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | C55A6.12 | ||||||||
| DB_info | Database | AceView | gene | 5L980 | |||||
| WormFlux | gene | WBGene00044019 | |||||||
| NDB | locus_tag | CELE_C55A6.12 | |||||||
| NCBI | gene | 3565529 | |||||||
| RefSeq | protein | NM_001028571.5 | |||||||
| NM_001307775.3 | |||||||||
| TrEMBL | UniProtAcc | Q5FC47 | |||||||
| N1NVC0 | |||||||||
| UniProt_GCRP | UniProtAcc | Q5FC47 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 03 Dec 2004 17:24:30 | WBPerson1983 | Event | Split_from | WBGene00008330 | ||
| Split_from | WBGene00008330 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (21) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00015324 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00016135 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00008330 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013674 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including CAN; germline precursor cell; intestine; somatic gonad precursor; and tail hypodermis based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on tiling array; RNA-seq; microarray; and proteomic studies. Is affected by eighteen chemicals including rotenone; D-glucose; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: THAP4-like, heme-binding beta-barrel domain and Calycin. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C55A6.12a | |||||||
| C55A6.12b | |||||||||
| Corresponding_CDS_history | C55A6.12:wp192 | ||||||||
| Corresponding_transcript | C55A6.12a.1 | ||||||||
| C55A6.12b.1 | |||||||||
| Other_sequence (41) | |||||||||
| Associated_feature | WBsf653121 | ||||||||
| WBsf1001368 | |||||||||
| WBsf1001369 | |||||||||
| WBsf1020461 | |||||||||
| WBsf234543 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076244 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00094662 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012428 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018459 | ||||||||
| Expr1040160 | |||||||||
| Expr1147190 | |||||||||
| Expr2001949 | |||||||||
| Expr2020172 | |||||||||
| Drives_construct | WBCnstr00023799 | ||||||||
| Construct_product | WBCnstr00023799 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (169) | |||||||||
| Map_info | Positive | Positive_clone | C55A6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 3.17463 | |||||||
| Reference | WBPaper00065331 | ||||||||
| Method | Gene |
