WormBase Tree Display for Gene: WBGene00008571
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| WBGene00008571 | SMap | S_parent | Sequence | F08B12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | prmn-1 | Person_evidence | WBPerson691 | |||||
| Sequence_name | F08B12.1 | ||||||||
| Molecular_name | F08B12.1 | ||||||||
| F08B12.1.1 | |||||||||
| CE03162 | |||||||||
| Other_name | CELE_F08B12.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | prmn-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 Dec 2012 14:02:14 | WBPerson2970 | Name_change | CGC_name | prmn-1 | ||||
| 3 | 02 Mar 2018 10:40:21 | WBPerson4025 | Event | Split_into | WBGene00303052 | ||||
| Split_into | WBGene00303052 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | prmn | ||||||||
| Allele (110) | |||||||||
| Strain | WBStrain00036390 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00063780 | ||||||||
| 00063781 | |||||||||
| 00116485 | |||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | prmn-1 is orthologous to the human gene Prominin1 (PROML1); Prominin1 is a conserved glycoprotein and a member of the pentaspan transmembrane glycoproteins (5-transmembrane, 5-TM). | Curator_confirmed | WBPerson324 | |||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 04 Nov 2013 00:00:00 | ||||||||
| Automated_description | Predicted to be located in membrane. Human ortholog(s) of this gene implicated in cone-rod dystrophy 12; retinal macular dystrophy; and retinitis pigmentosa 41. Is an ortholog of human PROM1 (prominin 1) and PROM2 (prominin 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110376 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9454) | ||||
| DOID:0111019 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9454) | ||||||
| DOID:0070438 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9454) | ||||||
| Molecular_info | Corresponding_CDS | F08B12.1 | |||||||
| Corresponding_CDS_history | F08B12.1a:wp264 | ||||||||
| F08B12.1b:wp264 | |||||||||
| Corresponding_transcript | F08B12.1.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030628 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00012863 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043961 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012828 | ||||||||
| Expr1033735 | |||||||||
| Expr1147935 | |||||||||
| Expr2015097 | |||||||||
| Expr2033334 | |||||||||
| Drives_construct | WBCnstr00032867 | ||||||||
| Construct_product | WBCnstr00032867 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (171) | |||||||||
| Interaction | WBInteraction000123134 | ||||||||
| WBInteraction000123135 | |||||||||
| WBInteraction000355285 | |||||||||
| WBInteraction000459227 | |||||||||
| WBInteraction000580600 | |||||||||
| Map_info | Map | X | Position | 3.47275 | |||||
| Positive | Positive_clone | F08B12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026601 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042780 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
