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WormBase Tree Display for Gene: WBGene00005003

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Name Class

WBGene00005003EvidenceAuthor_evidencePatthy L
Hodgkin JA
SMapS_parentSequenceF27C8
IdentityVersion1
NameCGC_namespp-18
Sequence_nameF27C8.4
Molecular_nameF27C8.4a
F27C8.4a.1
CE03269
F27C8.4b
CE49790
F27C8.4b.1
Other_nameCELE_F27C8.4Accession_evidenceNDBBX284604
Public_namespp-18
DB_infoDatabaseAceViewgene4K359
WormQTLgeneWBGene00005003
WormFluxgeneWBGene00005003
NDBlocus_tagCELE_F27C8.4
NCBIgene185015
RefSeqproteinNM_001307043.3
NM_069303.6
TrEMBLUniProtAccA0A061AKY5
Q19837
UniProt_GCRPUniProtAccQ19837
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:37WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspp
Allele (13)
RNASeq_FPKM (74)
GO_annotation00065743
Ortholog (22)
Structured_descriptionAutomated_descriptionInvolved in innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSF27C8.4a
F27C8.4b
Corresponding_transcriptF27C8.4a.1
F27C8.4b.1
Other_sequenceCSC00706_1
Acan_isotig15926
FD517186.1
CBC01973_1
FD514900.1
FD516627.1
Oden_isotig24770
CBC01973_2
CJC02180_1
Associated_featureWBsf646242
WBsf228846
WBsf228847
Experimental_infoRNAi_resultWBRNAi00092944Inferred_automaticallyRNAi_primary
WBRNAi00045735Inferred_automaticallyRNAi_primary
WBRNAi00075930Inferred_automaticallyRNAi_primary
WBRNAi00013994Inferred_automaticallyRNAi_primary
WBRNAi00031491Inferred_automaticallyRNAi_primary
Expr_patternExpr1013487
Expr1032489
Expr1149642
Expr2016073
Expr2034309
Drives_constructWBCnstr00035276
Construct_productWBCnstr00035276
Microarray_results (18)
Expression_cluster (284)
Interaction (48)
Map_infoMapIVPosition4.32629Error0.001722
PositivePositive_cloneF27C8Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00006465
WBPaper00024209
WBPaper00027295
WBPaper00028482
WBPaper00061383
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene