WormBase Tree Display for Gene: WBGene00003905
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| WBGene00003905 | SMap | S_parent | Sequence | Y18D10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pad-1 | Person_evidence | WBPerson437 | |||||
| Sequence_name | Y18D10A.13 | ||||||||
| Molecular_name | Y18D10A.13 | ||||||||
| Y18D10A.13.1 | |||||||||
| CE27468 | |||||||||
| Other_name | Y18D10A15 | Paper_evidence | WBPaper00012822 | ||||||
| CELE_Y18D10A.13 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | pad-1 | ||||||||
| DB_info | Database | AceView | gene | 1N493 | |||||
| WormQTL | gene | WBGene00003905 | |||||||
| WormFlux | gene | WBGene00003905 | |||||||
| NDB | locus_tag | CELE_Y18D10A.13 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003905|UniProtKB=Q9XW10 | |||||||
| family | PTHR14042 | ||||||||
| NCBI | gene | 173156 | |||||||
| RefSeq | protein | NM_060851.7 | |||||||
| SwissProt | UniProtAcc | Q9XW10 | |||||||
| TREEFAM | TREEFAM_ID | TF316855 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XW10 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pad | ||||||||
| Allele (476) | |||||||||
| Possibly_affected_by | WBVar02157842 | ||||||||
| WBVar02157843 | |||||||||
| WBVar02157844 | |||||||||
| Strain | WBStrain00001513 | ||||||||
| WBStrain00001514 | |||||||||
| WBStrain00051418 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00102967 | ||||||||
| 00102968 | |||||||||
| 00102969 | |||||||||
| 00102970 | |||||||||
| 00111976 | |||||||||
| Ortholog (49) | |||||||||
| Structured_description | Concise_description | The pad-1 gene encodes a highly conserved, but unfamiliar, protein that is required for embryonic development. | Paper_evidence | WBPaper00004319 | |||||
| WBPaper00012822 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in Golgi to endosome transport and protein transport. Predicted to be located in endosome and trans-Golgi network. Expressed in head and tail. Used to study Down syndrome. Is an ortholog of human DOP1A (DOP1 leucine zipper like protein A) and DOP1B (DOP1 leucine zipper like protein B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:14250 | Homo sapiens | Paper_evidence | WBPaper00004319 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 29 May 2017 00:00:00 | ||||||||
| Disease_relevance | Human Dopey family member 2(C21ORF5/DOPEY2), is located within the Down syndrome critical region of chromosome 21, which is associated with Down Syndrome; mutations in the elegans ortholog of DOPEY2, pad-1, cause embryonic lethality with most of the embryo failing to undergo proper patterning. | Homo sapiens | Paper_evidence | WBPaper00004319 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 29 May 2017 00:00:00 | ||||||||
| Models_disease_in_annotation | WBDOannot00000166 | ||||||||
| Molecular_info | Corresponding_CDS | Y18D10A.13 | |||||||
| Corresponding_CDS_history | Y18D10A.13:wp49 | ||||||||
| Corresponding_transcript | Y18D10A.13.1 | ||||||||
| Other_sequence (43) | |||||||||
| Associated_feature (19) | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Chronogram873 | ||||||||
| Expr6900 | |||||||||
| Expr6901 | |||||||||
| Expr13702 | |||||||||
| Expr1025004 | |||||||||
| Expr1031842 | |||||||||
| Expr1159115 | |||||||||
| Expr2014679 | |||||||||
| Expr2032912 | |||||||||
| Drives_construct | WBCnstr00002370 | ||||||||
| WBCnstr00002371 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction | WBInteraction000042764 | ||||||||
| WBInteraction000046338 | |||||||||
| WBInteraction000568010 | |||||||||
| WBInteraction000583067 | |||||||||
| Map_info | Map | I | Position | 14.1738 | Error | 0.003186 | |||
| Positive | Positive_clone | Y18D10A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (17) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
