WormBase Tree Display for Gene: WBGene00008352
expand all nodes | collapse all nodes | view schema
WBGene00008352 | SMap | S_parent | Sequence | cTel54X | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-6 | Person_evidence | WBPerson655 | |||||
Sequence_name | cTel54X.1 | ||||||||
Molecular_name | cTel54X.1 | ||||||||
cTel54X.1.1 | |||||||||
CE20619 | |||||||||
Other_name | CELE_CTEL54X.1 | Accession_evidence | NDB | BX284603 | |||||
Public_name | fbxa-6 | ||||||||
DB_info | Database | AceView | gene | 3A620 | |||||
WormQTL | gene | WBGene00008352 | |||||||
WormFlux | gene | WBGene00008352 | |||||||
NDB | locus_tag | CELE_CTEL54X.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00008352|UniProtKB=A4F303 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 183881 | |||||||
RefSeq | protein | NM_064723.2 | |||||||
TREEFAM | TREEFAM_ID | TF322006 | |||||||
TrEMBL | UniProtAcc | A4F303 | |||||||
UniProt_GCRP | UniProtAcc | A4F303 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-6 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (76) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (46) | |||||||||
Paralog (225) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in dopaminergic neurons; intestine; mechanosensory neurons; and rectal epithelium based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including levamisole; stavudine; and Rifampin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | cTel54X.1 | |||||||
Corresponding_transcript | cTel54X.1.1 | ||||||||
Associated_feature | WBsf226070 | ||||||||
Experimental_info | RNAi_result | WBRNAi00068269 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00043312 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012484 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00068270 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030296 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1015384 | ||||||||
Expr1163307 | |||||||||
Expr2011570 | |||||||||
Expr2029808 | |||||||||
Microarray_results (17) | |||||||||
Expression_cluster (176) | |||||||||
Map_info | Map | III | Position | -27.2913 | |||||
Positive | Positive_clone | cTel54X | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
WBPaper00041771 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |