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WormBase Tree Display for Gene: WBGene00008681

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Name Class

WBGene00008681SMapS_parentSequenceF11A6
IdentityVersion3
NameCGC_namescrm-4Paper_evidenceWBPaper00029228
Person_evidenceWBPerson1606
Sequence_nameF11A6.2
Molecular_nameF11A6.2
F11A6.2.1
CE41222
Other_nameplsc-4Person_evidenceWBPerson1626
CELE_F11A6.2Accession_evidenceNDBBX284601
Public_namescrm-4
DB_infoDatabaseAceViewgene1M270
WormQTLgeneWBGene00008681
WormFluxgeneWBGene00008681
NDBlocus_tagCELE_F11A6.2
PanthergeneCAEEL|WormBase=WBGene00008681|UniProtKB=O62149
familyPTHR23248
NCBIgene184340
RefSeqproteinNM_060574.5
TREEFAMTREEFAM_IDTF314939
TrEMBLUniProtAccO62149
UniProt_GCRPUniProtAccO62149
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
216 Oct 2006 17:00:28WBPerson2970Name_changeCGC_nameplsc-4
303 May 2007 10:33:07WBPerson2970Name_changeCGC_namescrm-4
Other_nameplsc-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classscrm
Allele (34)
StrainWBStrain00033259
WBStrain00033272
RNASeq_FPKM (74)
GO_annotation00037188
00037189
00037190
00116557
00116558
Ortholog (35)
ParalogWBGene00014200Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011935Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015437Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00009753Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00019531Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00013052Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00019530Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00235369Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptionscrm-4 encodes a putative phospholipid scramblase homologous to humanPLSCR1-5, and paralogous to other C. elegans SCRMs (e.g., SCRM-1); inapoptotic germline cells, SCRM-4 is fully dispensable for normally rapidengulfment and largely dispensable for phosphatidylserine exposure;SCRM-4 does not bind WAH-1 in vitro, and scrm-4(tm624) mutants have noobvious phenotype.Paper_evidenceWBPaper00004911
WBPaper00012809
WBPaper00013208
WBPaper00013590
WBPaper00029228
Curator_confirmedWBPerson567
Date_last_updated16 May 2007 00:00:00
Automated_descriptionPredicted to enable phospholipid scramblase activity. Predicted to be involved in plasma membrane phospholipid scrambling. Predicted to be located in plasma membrane. Is an ortholog of several human genes including PLSCR2 (phospholipid scramblase 2); PLSCR3 (phospholipid scramblase 3); and PLSCR4 (phospholipid scramblase 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF11A6.2
Corresponding_CDS_historyF11A6.2:wp114
F11A6.2:wp177
Corresponding_transcriptF11A6.2.1
Associated_featureWBsf220358
Experimental_infoRNAi_resultWBRNAi00030813Inferred_automaticallyRNAi_primary
WBRNAi00062200Inferred_automaticallyRNAi_primary
WBRNAi00044359Inferred_automaticallyRNAi_primary
WBRNAi00097538Inferred_automaticallyRNAi_primary
WBRNAi00003364Inferred_automaticallyRNAi_primary
Expr_patternExpr1012624
Expr1033778
Expr1148299
Expr2015653
Expr2033885
Drives_constructWBCnstr00032775
Construct_productWBCnstr00032775
Microarray_results (20)
Expression_cluster (290)
InteractionWBInteraction000050587
WBInteraction000187215
WBInteraction000366772
WBInteraction000456427
WBInteraction000580606
Map_infoMapIPosition9.55039Error0.005902
PositivePositive_cloneF11A6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00028483
WBPaper00028527
WBPaper00029228
WBPaper00030738
WBPaper00032961
WBPaper00038491
WBPaper00042257
WBPaper00055090
WBPaper00058537
WBPaper00063045
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene