WormBase Tree Display for Gene: WBGene00003554
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| WBGene00003554 | Evidence | Author_evidence | Moehrlen F | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F57C12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nas-38 | Person_evidence | WBPerson1103 | |||||
| Sequence_name | F57C12.1 | ||||||||
| Molecular_name | F57C12.1 | ||||||||
| F57C12.1.1 | |||||||||
| CE53350 | |||||||||
| Other_name | CELE_F57C12.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nas-38 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nas | ||||||||
| Allele (46) | |||||||||
| Strain | WBStrain00002675 | ||||||||
| WBStrain00033142 | |||||||||
| WBStrain00037432 | |||||||||
| WBStrain00050878 | |||||||||
| WBStrain00050651 | |||||||||
| WBStrain00050652 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (32) | |||||||||
| Paralog (48) | |||||||||
| Structured_description | Concise_description | nas-38 encodes an astacin-like metalloprotease; loss of nas-38 activity via RNAi in an rrf-3 mutant background results in an extended life span. | Paper_evidence | WBPaper00006254 | |||||
| WBPaper00024242 | |||||||||
| WBPaper00026643 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 31 Oct 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable metalloendopeptidase activity. Involved in PERK-mediated unfolded protein response. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57C12.1 | |||||||
| Corresponding_CDS_history | F57C12.1:wp271 | ||||||||
| Corresponding_transcript | F57C12.1.1 | ||||||||
| Other_sequence (16) | |||||||||
| Associated_feature | WBsf647787 | ||||||||
| WBsf662417 | |||||||||
| WBsf1003804 | |||||||||
| WBsf1003805 | |||||||||
| WBsf1003806 | |||||||||
| WBsf1022143 | |||||||||
| WBsf235270 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00033023 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00089091 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065287 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002228 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091330 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015880 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048847 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061416 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6240 | ||||||||
| Expr1012018 | |||||||||
| Expr1031619 | |||||||||
| Expr1152596 | |||||||||
| Expr2013884 | |||||||||
| Expr2032124 | |||||||||
| Drives_construct | WBCnstr00003217 | ||||||||
| WBCnstr00036047 | |||||||||
| Construct_product | WBCnstr00021917 | ||||||||
| WBCnstr00036047 | |||||||||
| Regulate_expr_cluster | WBPaper00060703:nas-38(ok3407)_downregulated | ||||||||
| WBPaper00060703:nas-38(ok3407)_upregulated | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (214) | |||||||||
| Interaction (95) | |||||||||
| Map_info | Map | X | Position | -19.6569 | Error | 0.009808 | |||
| Positive | Positive_clone | F57C12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006254 | ||||||||
| WBPaper00024242 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060703 | |||||||||
| WBPaper00061938 | |||||||||
| WBPaper00062715 | |||||||||
| WBPaper00062894 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
