WormBase Tree Display for Gene: WBGene00006375
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| WBGene00006375 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F26D2 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | syp-1 | Person_evidence | WBPerson1547 | |||||
| Sequence_name | F26D2.2 | ||||||||
| Molecular_name | F26D2.2 | ||||||||
| F26D2.2.1 | |||||||||
| CE33925 | |||||||||
| Other_name | CELE_F26D2.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | syp-1 | ||||||||
| DB_info | Database | AceView | gene | 5Q887 | |||||
| WormQTL | gene | WBGene00006375 | |||||||
| WormFlux | gene | WBGene00006375 | |||||||
| NDB | locus_tag | CELE_F26D2.2 | |||||||
| NCBI | gene | 180102 | |||||||
| RefSeq | protein | NM_074744.7 | |||||||
| TREEFAM | TREEFAM_ID | TF317754 | |||||||
| TrEMBL | UniProtAcc | G5EGS8 | |||||||
| UniProt_GCRP | UniProtAcc | G5EGS8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00043289 | ||||
| Acquires_merge | WBGene00043289 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syp | ||||||||
| Allele (63) | |||||||||
| Strain | WBStrain00000290 | ||||||||
| WBStrain00034785 | |||||||||
| WBStrain00034786 | |||||||||
| WBStrain00051119 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00020833 | ||||||||
| 00020834 | |||||||||
| 00020835 | |||||||||
| 00020836 | |||||||||
| 00020837 | |||||||||
| 00020838 | |||||||||
| 00020839 | |||||||||
| 00020840 | |||||||||
| 00020841 | |||||||||
| Ortholog | WBGene00057339 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00025487 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00127788 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| chrV_pilon.g17139 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | syp-1 encodes a coiled-coil protein; syp-1 activity is required for stabilizing homologous associations between paired meiotic prophase chromosomes and for promoting crossover recombination; SYP-1 is a synaptonemal complex component that localizes to the central element that forms between paired homologous pachytene chromosomes. | Paper_evidence | WBPaper00005462 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Mar 2009 00:00:00 | ||||||||
| Automated_description | Enables protein homodimerization activity. Involved in positive regulation of reciprocal meiotic recombination; regulation of chromosome segregation; and synaptonemal complex assembly. Located in central element. Expressed in germ line. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F26D2.2 | |||||||
| Corresponding_CDS_history | F26D2.2:wp100 | ||||||||
| Corresponding_transcript | F26D2.2.1 | ||||||||
| Other_sequence | GR977571.1 | ||||||||
| SC00265 | |||||||||
| CBC02102_1 | |||||||||
| CBC06172_1 | |||||||||
| CJC04954_1 | |||||||||
| Associated_feature | WBsf233110 | ||||||||
| Experimental_info | RNAi_result (31) | ||||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00034384 | ||||||||
| Construct_product | WBCnstr00016721 | ||||||||
| WBCnstr00034384 | |||||||||
| Antibody (22) | |||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (147) | |||||||||
| Interaction (126) | |||||||||
| Map_info | Map | V | Position | 10.0424 | Error | 0.001284 | |||
| Positive | Positive_clone | F26D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4776 | |||||||
| 5344 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (88) | |||||||||
| Remark | Sequence connection from [Villeneuve AM] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
| Method | Gene |
