WormBase Tree Display for Gene: WBGene00006375

WBGene00006375 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F26D2
  Identity: Version: 2
    Name: CGC_name: syp-1 Person_evidence: WBPerson1547
      Sequence_name: F26D2.2
      Molecular_name: F26D2.2
        F26D2.2.1
        CE33925
      Other_name: CELE_F26D2.2 Accession_evidence: NDB BX284605
      Public_name: syp-1
    DB_info: Database: AceView gene 5Q887
        WormQTL gene WBGene00006375
        WormFlux gene WBGene00006375
        NDB locus_tag CELE_F26D2.2
        NCBI gene 180102
        RefSeq protein NM_074744.7
        TREEFAM TREEFAM_ID TF317754
        TrEMBL UniProtAcc G5EGS8
        UniProt_GCRP UniProtAcc G5EGS8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 10 Jun 2014 12:12:12 WBPerson1983 Event: Acquires_merge: WBGene00043289
      Acquires_merge: WBGene00043289
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: syp
    Allele (63)
    Strain: WBStrain00000290
      WBStrain00034785
      WBStrain00034786
      WBStrain00051119
    RNASeq_FPKM (74)
    GO_annotation: 00020833
      00020834
      00020835
      00020836
      00020837
      00020838
      00020839
      00020840
      00020841
    Ortholog: WBGene00057339 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00025487 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
      WBGene00127788 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
      chrV_pilon.g17139 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: syp-1 encodes a coiled-coil protein; syp-1 activity is required for stabilizing homologous associations between paired meiotic prophase chromosomes and for promoting crossover recombination; SYP-1 is a synaptonemal complex component that localizes to the central element that forms between paired homologous pachytene chromosomes. Paper_evidence: WBPaper00005462
          Curator_confirmed: WBPerson1843
          Date_last_updated: 16 Mar 2009 00:00:00
      Automated_description: Enables protein homodimerization activity. Involved in positive regulation of reciprocal meiotic recombination; regulation of chromosome segregation; and synaptonemal complex assembly. Located in central element. Expressed in germ line. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F26D2.2
    Corresponding_CDS_history: F26D2.2:wp100
    Corresponding_transcript: F26D2.2.1
    Other_sequence: GR977571.1
      SC00265
      CBC02102_1
      CBC06172_1
      CJC04954_1
    Associated_feature: WBsf233110
  Experimental_info: RNAi_result (31)
    Expr_pattern (11)
    Drives_construct: WBCnstr00034384
    Construct_product: WBCnstr00016721
      WBCnstr00034384
    Antibody (22)
    Microarray_results (30)
    Expression_cluster (147)
    Interaction: WBInteraction000001815
      WBInteraction000008950
      WBInteraction000008951
      WBInteraction000031763
      WBInteraction000116041
      WBInteraction000137780
      WBInteraction000166333
      WBInteraction000171490
      WBInteraction000192264
      WBInteraction000195795
      WBInteraction000199756
      WBInteraction000212805
      WBInteraction000239578
      WBInteraction000241091
      WBInteraction000242183
      WBInteraction000243000
      WBInteraction000246819
      WBInteraction000248712
      WBInteraction000250502
      WBInteraction000256527
      WBInteraction000284241
      WBInteraction000285763
      WBInteraction000289890
      WBInteraction000302695
      WBInteraction000303196
      WBInteraction000303406
      WBInteraction000306449
      WBInteraction000307398
      WBInteraction000307665
      WBInteraction000312288
      WBInteraction000314570
      WBInteraction000317824
      WBInteraction000318500
      WBInteraction000321597
      WBInteraction000321953
      WBInteraction000325787
      WBInteraction000330060
      WBInteraction000331599
      WBInteraction000337832
      WBInteraction000343029
      WBInteraction000345134
      WBInteraction000356279
      WBInteraction000357347
      WBInteraction000359231
      WBInteraction000362336
      WBInteraction000365216
      WBInteraction000365267
      WBInteraction000367441
      WBInteraction000370989
      WBInteraction000374493
      WBInteraction000374658
      WBInteraction000375392
      WBInteraction000376164
      WBInteraction000377046
      WBInteraction000378907
      WBInteraction000378930
      WBInteraction000379278
      WBInteraction000379448
      WBInteraction000384028
      WBInteraction000385758
      WBInteraction000386817
      WBInteraction000387135
      WBInteraction000389223
      WBInteraction000389519
      WBInteraction000391105
      WBInteraction000392910
      WBInteraction000393864
      WBInteraction000394359
      WBInteraction000396623
      WBInteraction000397315
      WBInteraction000399245
      WBInteraction000399441
      WBInteraction000399941
      WBInteraction000402741
      WBInteraction000403004
      WBInteraction000406015
      WBInteraction000407750
      WBInteraction000408418
      WBInteraction000411818
      WBInteraction000412983
      WBInteraction000413087
      WBInteraction000415207
      WBInteraction000415584
      WBInteraction000425193
      WBInteraction000426174
      WBInteraction000427269
      WBInteraction000432996
      WBInteraction000435222
      WBInteraction000437241
      WBInteraction000438413
      WBInteraction000439130
      WBInteraction000443915
      WBInteraction000445443
      WBInteraction000446901
      WBInteraction000447914
      WBInteraction000452353
      WBInteraction000452584
      WBInteraction000453724
      WBInteraction000453965
      WBInteraction000454995
      WBInteraction000457813
      WBInteraction000457895
      WBInteraction000502928
      WBInteraction000503575
      WBInteraction000521707
      WBInteraction000521708
      WBInteraction000521709
      WBInteraction000521710
      WBInteraction000522497
      WBInteraction000522498
      WBInteraction000522499
      WBInteraction000522500
      WBInteraction000522501
      WBInteraction000540757
      WBInteraction000560296
      WBInteraction000567053
      WBInteraction000567072
      WBInteraction000567074
      WBInteraction000567077
      WBInteraction000567079
      WBInteraction000567083
      WBInteraction000567084
      WBInteraction000567085
      WBInteraction000567091
      WBInteraction000575265
      WBInteraction000585554
  Map_info: Map: V Position: 10.0424 Error: 0.001284
    Positive: Positive_clone: F26D2 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4776
        5344
    Pseudo_map_position
  Reference (88)
  Remark: Sequence connection from [Villeneuve AM]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
  Method: Gene