WormBase Tree Display for Gene: WBGene00000285
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| WBGene00000285 | SMap | S_parent | Sequence | C13C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cal-1 | Person_evidence | WBPerson261 | |||||
| Sequence_name | C13C12.1 | ||||||||
| Molecular_name | C13C12.1a | ||||||||
| C13C12.1a.1 | |||||||||
| CE42931 | |||||||||
| C13C12.1b | |||||||||
| CE47386 | |||||||||
| C13C12.1b.1 | |||||||||
| Other_name | CELE_C13C12.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cal-1 | ||||||||
| DB_info | Database | AceView | gene | 5M996 | |||||
| WormQTL | gene | WBGene00000285 | |||||||
| WormFlux | gene | WBGene00000285 | |||||||
| NDB | locus_tag | CELE_C13C12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000285|UniProtKB=P04630 | |||||||
| family | PTHR23050 | ||||||||
| NCBI | gene | 179715 | |||||||
| RefSeq | protein | NM_001269500.2 | |||||||
| NM_001269499.3 | |||||||||
| SwissProt | UniProtAcc | P04630 | |||||||
| TrEMBL | UniProtAcc | H9G2Z0 | |||||||
| UniProt_GCRP | UniProtAcc | P04630 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cal | ||||||||
| Allele (42) | |||||||||
| Legacy_information | No mutants known. Sequence related to calmodulin and troponin C. | ||||||||
| [C.elegansII] NMK. Sequence related to calmodulin and troponin C. [Salvato et al. 1986] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00038874 | ||||||||
| 00038875 | |||||||||
| 00107173 | |||||||||
| Ortholog (38) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | cal-1 encodes one of five predicted C. elegans calcium-binding calmodulin homologs (the others being CAL-2, CAL-3, CAL-4, and CMD-1); as loss of cal-1 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of CAL-1 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00000912 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00024497 | |||||||||
| WBPaper00025054 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson480 | |||||||||
| Date_last_updated | 18 Oct 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium ion binding activity. Human ortholog(s) of this gene implicated in Alzheimer's disease. Is an ortholog of human CALML3 (calmodulin like 3); CALML4 (calmodulin like 4); and CALML5 (calmodulin like 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18180) | ||||
| Molecular_info | Corresponding_CDS | C13C12.1a | |||||||
| C13C12.1b | |||||||||
| Corresponding_CDS_history | C13C12.1:wp193 | ||||||||
| Corresponding_transcript | C13C12.1a.1 | ||||||||
| C13C12.1b.1 | |||||||||
| Other_sequence (58) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040428 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00001579 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030228 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010678 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076119 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011234 | ||||||||
| Expr1030187 | |||||||||
| Expr1144493 | |||||||||
| Expr2009701 | |||||||||
| Expr2027940 | |||||||||
| Drives_construct | WBCnstr00037605 | ||||||||
| Construct_product | WBCnstr00037605 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (108) | |||||||||
| Interaction (66) | |||||||||
| Map_info | Map | V | Position | 4.44228 | Error | 0.009433 | |||
| Positive | Positive_clone | C13C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| D2406 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00000912 | ||||||||
| WBPaper00002006 | |||||||||
| WBPaper00006081 | |||||||||
| WBPaper00013992 | |||||||||
| WBPaper00014145 | |||||||||
| WBPaper00019540 | |||||||||
| WBPaper00027284 | |||||||||
| WBPaper00030971 | |||||||||
| WBPaper00050050 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
