WormBase Tree Display for Gene: WBGene00003465
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| WBGene00003465 | SMap | S_parent | Sequence | T13F2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | msp-78 | Person_evidence | WBPerson680 | |||||
| Sequence_name | T13F2.11 | ||||||||
| Molecular_name | T13F2.11 | ||||||||
| T13F2.11.1 | |||||||||
| CE13638 | |||||||||
| Other_name | CELE_T13F2.11 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | msp-78 | ||||||||
| DB_info | Database | AceView | gene | 4K535 | |||||
| WormQTL | gene | WBGene00003465 | |||||||
| WormFlux | gene | WBGene00003465 | |||||||
| NDB | locus_tag | CELE_T13F2.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003465|UniProtKB=Q94053 | |||||||
| family | PTHR22920 | ||||||||
| NCBI | gene | 177814 | |||||||
| RefSeq | protein | NM_069341.6 | |||||||
| SwissProt | UniProtAcc | Q94053 | |||||||
| UniProt_GCRP | UniProtAcc | Q94053 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | msp | ||||||||
| Allele (13) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); near msp-56. [Ward et al. (1988); BA] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00086951 | ||||||||
| 00086952 | |||||||||
| 00086953 | |||||||||
| 00086954 | |||||||||
| 00086955 | |||||||||
| Ortholog (31) | |||||||||
| Paralog (52) | |||||||||
| Structured_description | Concise_description | msp-78 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||||
| WBPaper00002143 | |||||||||
| WBPaper00004591 | |||||||||
| WBPaper00005670 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 31 Mar 2005 00:00:00 | ||||||||
| Automated_description | Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T13F2.11 | |||||||
| Corresponding_transcript | T13F2.11.1 | ||||||||
| Other_sequence (16) | |||||||||
| Associated_feature | WBsf1017998 | ||||||||
| WBsf228868 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr3417 | ||||||||
| Expr1156853 | |||||||||
| Expr2013790 | |||||||||
| Expr2032028 | |||||||||
| Drives_construct | WBCnstr00036102 | ||||||||
| Construct_product | WBCnstr00016324 | ||||||||
| WBCnstr00036102 | |||||||||
| Antibody | WBAntibody00000037 | ||||||||
| WBAntibody00000038 | |||||||||
| WBAntibody00000854 | |||||||||
| WBAntibody00000855 | |||||||||
| WBAntibody00000856 | |||||||||
| WBAntibody00000857 | |||||||||
| WBAntibody00000858 | |||||||||
| Microarray_results | SMD_T13F2.11 | ||||||||
| A_12_P111800 | |||||||||
| Aff_T13F2.11 | |||||||||
| GPL19516_CGZ0035024 | |||||||||
| GPL21109_T13F2.11 | |||||||||
| GPL3518_CE13638 | |||||||||
| GPL8673_T13F2_11P00299 | |||||||||
| GPL9450_T13F2.11 | |||||||||
| cea2.d.38781 | |||||||||
| Expression_cluster (233) | |||||||||
| Interaction (214) | |||||||||
| Map_info | Map | IV | Position | 4.40504 | |||||
| Positive | Positive_clone | MA7 | |||||||
| T13F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001023 | ||||||||
| WBPaper00024312 | |||||||||
| WBPaper00040308 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00057218 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
