WormBase Tree Display for Gene: WBGene00000780

WBGene00000780 Evidence: Person_evidence: WBPerson567
  SMap: S_parent: Sequence: F49D11
  Identity: Version: 1
    Name: CGC_name: cpn-4 Person_evidence: WBPerson268
      Sequence_name: F49D11.8
      Molecular_name: F49D11.8
        F49D11.8.1
        CE17082
      Other_name: CELE_F49D11.8 Accession_evidence: NDB BX284601
      Public_name: cpn-4
    DB_info: Database: AceView gene 1L516
        WormQTL gene WBGene00000780
        WormFlux gene WBGene00000780
        NDB locus_tag CELE_F49D11.8
        NCBI gene 172996
        RefSeq protein NM_060448.5
        TrEMBL UniProtAcc O44727
        UniProt_GCRP UniProtAcc O44727
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cpn
    Allele (24)
    Strain: WBStrain00031054
    RNASeq_FPKM (74)
    GO_annotation: 00033209
      00033210
      00033211
    Ortholog (31)
    Paralog: WBGene00000779 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00000777 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000778 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006819 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016898 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00019361 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020808 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: cpn-4 encodes a calponin homolog, most closely related to its paralog CPN-3 in C. elegans; CPN-4 is somewhat more similar to calponins per se (such as CLP1 and CLP2 in humans) than to the to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25. Paper_evidence: WBPaper00012852
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization. Predicted to be located in actin cytoskeleton. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F49D11.8
    Corresponding_CDS_history: F49D11.8:wp93
    Corresponding_transcript: F49D11.8.1
    Other_sequence (48)
    Associated_feature: WBsf649609
      WBsf985129
      WBsf985130
      WBsf1010610
      WBsf220301
  Experimental_info: RNAi_result: WBRNAi00047828 Inferred_automatically: RNAi_primary
      WBRNAi00032525 Inferred_automatically: RNAi_primary
      WBRNAi00003728 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014776
      Expr1151664
      Expr2010496
      Expr2028736
    Microarray_results (19)
    Expression_cluster (203)
    Interaction (13)
  Map_info: Map: I Position: 5.90464 Error: 0.033967
    Positive: Positive_clone: F49D11 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00028483
    WBPaper00028985
    WBPaper00033099
    WBPaper00038491
    WBPaper00046461
    WBPaper00055090
    WBPaper00065026
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene