WormBase Tree Display for Gene: WBGene00000779
expand all nodes | collapse all nodes | view schema
| WBGene00000779 | Evidence | Person_evidence | WBPerson567 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F28H1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | cpn-3 | Person_evidence | WBPerson268 | |||||
| Sequence_name | F28H1.2 | ||||||||
| Molecular_name | F28H1.2 | ||||||||
| F28H1.2.1 | |||||||||
| CE09767 | |||||||||
| Other_name | CELE_F28H1.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | cpn-3 | ||||||||
| DB_info | Database | AceView | gene | 1E557 | |||||
| WormQTL | gene | WBGene00000779 | |||||||
| WormFlux | gene | WBGene00000779 | |||||||
| NDB | locus_tag | CELE_F28H1.2 | |||||||
| NCBI | gene | 171986 | |||||||
| RefSeq | protein | NM_058881.7 | |||||||
| TrEMBL | UniProtAcc | O01542 | |||||||
| UniProt_GCRP | UniProtAcc | O01542 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpn | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00036062 | ||||||||
| WBStrain00037673 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00024983 | ||||||||
| 00024984 | |||||||||
| 00024985 | |||||||||
| 00024986 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00000780 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00000777 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000778 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006819 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016898 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019361 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020808 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cpn-3 encodes a calponin homolog, most closely related to its paralog CPN-4 in C. elegans; CPN-3 is more similar to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25 than to calponin per se. | Paper_evidence | WBPaper00012852 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization. Located in myofibril. Expressed in anal region; body wall musculature; egg-laying apparatus; enteric muscle; and head neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F28H1.2 | |||||||
| Corresponding_transcript | F28H1.2.1 | ||||||||
| Other_sequence (203) | |||||||||
| Associated_feature | WBsf643173 | ||||||||
| WBsf983295 | |||||||||
| WBsf983296 | |||||||||
| WBsf1009590 | |||||||||
| WBsf217467 | |||||||||
| WBsf217468 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00003520 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00094941 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111133 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031544 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045866 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4918 | ||||||||
| Expr9362 | |||||||||
| Expr1025528 | |||||||||
| Expr1030483 | |||||||||
| Expr1149770 | |||||||||
| Expr2010495 | |||||||||
| Expr2028735 | |||||||||
| Drives_construct | WBCnstr00012331 | ||||||||
| WBCnstr00037282 | |||||||||
| Construct_product | WBCnstr00013927 | ||||||||
| WBCnstr00037282 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (232) | |||||||||
| Interaction (31) | |||||||||
| Map_info | Map | I | Position | -1.88872 | Error | 0.003668 | |||
| Positive | Positive_clone | F28H1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5096 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031003 | ||||||||
| WBPaper00033099 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
