WormBase Tree Display for Gene: WBGene00000777
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| WBGene00000777 | SMap | S_parent | Sequence | F43G9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cpn-1 | Person_evidence | WBPerson268 | |||||
| Sequence_name | F43G9.9 | ||||||||
| Molecular_name | F43G9.9 | ||||||||
| F43G9.9.1 | |||||||||
| CE10370 | |||||||||
| F43G9.9.2 | |||||||||
| Other_name | CELE_F43G9.9 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | cpn-1 | ||||||||
| DB_info | Database | AceView | gene | 1J212 | |||||
| WormQTL | gene | WBGene00000777 | |||||||
| WormFlux | gene | WBGene00000777 | |||||||
| NDB | locus_tag | CELE_F43G9.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000777|UniProtKB=G5EFB5 | |||||||
| family | PTHR18959 | ||||||||
| NCBI | gene | 172660 | |||||||
| RefSeq | protein | NM_001383488.2 | |||||||
| TrEMBL | UniProtAcc | G5EFB5 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFB5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpn | ||||||||
| Allele (23) | |||||||||
| Legacy_information | [Metzstein M] cpn for CalPoNin family. No mutants known. | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00017780 | ||||||||
| 00017781 | |||||||||
| 00017782 | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00006819 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00020808 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000778 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019361 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016898 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000779 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000780 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cpn-1 encodes a calponin homolog, more closely related to calponin per se than to its paralogs transgelin (SM22 alpha) or neuronal protein NP25, that is is dispensable for viability and gross morphology in mass RNAi screens, and that has no obvious mutant phenotype in a rearrangement that probably disrupts cpn-1. | Paper_evidence | WBPaper00003698 | |||||
| WBPaper00012852 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization. Predicted to be located in actin cytoskeleton. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F43G9.9 | |||||||
| Corresponding_transcript | F43G9.9.1 | ||||||||
| F43G9.9.2 | |||||||||
| Other_sequence (90) | |||||||||
| Associated_feature | WBsf649404 | ||||||||
| WBsf219954 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00047227 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004754 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080520 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066093 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003665 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062249 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027914 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027858 | ||||||||
| Expr1030481 | |||||||||
| Expr1151087 | |||||||||
| Expr2010493 | |||||||||
| Expr2028733 | |||||||||
| Drives_construct | WBCnstr00037284 | ||||||||
| Construct_product | WBCnstr00017936 | ||||||||
| WBCnstr00037284 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (184) | |||||||||
| Interaction (125) | |||||||||
| Map_info | Map | I | Position | 3.01302 | Error | 0.000293 | |||
| Positive | Positive_clone | F43G9 | Person_evidence | WBPerson1274 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003698 | ||||||||
| WBPaper00024200 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
