WormBase Tree Display for Gene: WBGene00000780
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WBGene00000780 | Evidence | Person_evidence | WBPerson567 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F49D11 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cpn | ||||||
Allele (24) | |||||||
Strain | WBStrain00031054 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00033209 | ||||||
00033210 | |||||||
00033211 | |||||||
Ortholog (31) | |||||||
Paralog | WBGene00000779 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | |||||||
WBGene00000777 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00000778 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00006819 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00016898 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00019361 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00020808 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | cpn-4 encodes a calponin homolog, most closely related to its paralog CPN-3 in C. elegans; CPN-4 is somewhat more similar to calponins per se (such as CLP1 and CLP2 in humans) than to the to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25. | Paper_evidence | WBPaper00012852 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization. Predicted to be located in actin cytoskeleton. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F49D11.8 | |||||
Corresponding_CDS_history | F49D11.8:wp93 | ||||||
Corresponding_transcript | F49D11.8.1 | ||||||
Other_sequence (48) | |||||||
Associated_feature | WBsf649609 | ||||||
WBsf985129 | |||||||
WBsf985130 | |||||||
WBsf1010610 | |||||||
WBsf220301 | |||||||
Experimental_info | RNAi_result | WBRNAi00047828 | Inferred_automatically | RNAi_primary | |||
WBRNAi00032525 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00003728 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1014776 | ||||||
Expr1151664 | |||||||
Expr2010496 | |||||||
Expr2028736 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (203) | |||||||
Interaction (13) | |||||||
Map_info | Map | I | Position | 5.90464 | Error | 0.033967 | |
Positive | Positive_clone | F49D11 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00028483 | ||||||
WBPaper00028985 | |||||||
WBPaper00033099 | |||||||
WBPaper00038491 | |||||||
WBPaper00046461 | |||||||
WBPaper00055090 | |||||||
WBPaper00065026 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |