WormBase Tree Display for Gene: WBGene00004225
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WBGene00004225 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F56C11 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | ptr-11 | Person_evidence | WBPerson349 | |||||
Sequence_name | F56C11.2 | ||||||||
Molecular_name | F56C11.2a | ||||||||
F56C11.2a.1 | |||||||||
CE17902 | |||||||||
F56C11.2b | |||||||||
CE49167 | |||||||||
F56C11.2a.2 | |||||||||
F56C11.2b.1 | |||||||||
Other_name | CELE_F56C11.2 | Accession_evidence | NDB | BX284601 | |||||
Public_name | ptr-11 | ||||||||
DB_info | Database | AceView | gene | 1A634 | |||||
WormQTL | gene | WBGene00004225 | |||||||
WormFlux | gene | WBGene00004225 | |||||||
NDB | locus_tag | CELE_F56C11.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004225|UniProtKB=O44978 | |||||||
family | PTHR10796 | ||||||||
NCBI | gene | 171609 | |||||||
RefSeq | protein | NM_058286.8 | |||||||
NM_001306284.3 | |||||||||
TrEMBL | UniProtAcc | V6CLI4 | |||||||
O44978 | |||||||||
UniProt_GCRP | UniProtAcc | O44978 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ptr | ||||||||
Allele (153) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00033706 | ||||||||
00033707 | |||||||||
00033708 | |||||||||
00033709 | |||||||||
00033710 | |||||||||
00033711 | |||||||||
00112515 | |||||||||
Ortholog (34) | |||||||||
Paralog (30) | |||||||||
Structured_description | Concise_description | ptr-11 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-11is required for normal growth to full size, locomotion, and vulvalmorphogenesis. | Paper_evidence | WBPaper00024393 | |||||
WBPaper00026841 | |||||||||
WBPaper00027263 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 08 Nov 2006 00:00:00 | ||||||||
Automated_description | Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F56C11.2a | |||||||
F56C11.2b | |||||||||
Corresponding_transcript | F56C11.2a.1 | ||||||||
F56C11.2a.2 | |||||||||
F56C11.2b.1 | |||||||||
Other_sequence (49) | |||||||||
Associated_feature (15) | |||||||||
Experimental_info | RNAi_result | WBRNAi00076951 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00075794 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032935 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048650 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076919 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00003809 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1021242 | ||||||||
Expr1032079 | |||||||||
Expr1152412 | |||||||||
Expr2015154 | |||||||||
Expr2033392 | |||||||||
Drives_construct | WBCnstr00035624 | ||||||||
Construct_product | WBCnstr00035624 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (219) | |||||||||
Interaction | WBInteraction000300955 | ||||||||
WBInteraction000448747 | |||||||||
WBInteraction000466592 | |||||||||
WBInteraction000468493 | |||||||||
WBInteraction000551576 | |||||||||
Map_info | Map | I | Position | -19.1415 | Error | 0.002875 | |||
Positive | Positive_clone | F56C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00004265 | ||||||||
WBPaper00024393 | |||||||||
WBPaper00026841 | |||||||||
WBPaper00031865 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064105 | |||||||||
WBPaper00066317 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |