WormBase Tree Display for Gene: WBGene00008198
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| WBGene00008198 | SMap | S_parent | Sequence | C49C3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C49C3.8 | |||||||
| Molecular_name | C49C3.8a | ||||||||
| C49C3.8a.1 | |||||||||
| CE40756 | |||||||||
| C49C3.8b | |||||||||
| CE19747 | |||||||||
| C49C3.8b.1 | |||||||||
| Other_name | CELE_C49C3.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | C49C3.8 | ||||||||
| DB_info | Database | AceView | gene | 4S281 | |||||
| WormQTL | gene | WBGene00008198 | |||||||
| WormFlux | gene | WBGene00008198 | |||||||
| NDB | locus_tag | CELE_C49C3.8 | |||||||
| NCBI | gene | 178517 | |||||||
| RefSeq | protein | NM_001269009.3 | |||||||
| NM_001269008.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF351243 | |||||||
| TrEMBL | UniProtAcc | D4PHA1 | |||||||
| Q9XUF7 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9XUF7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (75) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (16) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including body wall muscle cell; excretory cell; germ line; neurons; and retrovesicular ganglion based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including eat-2; sir-2.1; and pgl-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seven chemicals including Alovudine; allantoin; and Sirolimus based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C49C3.8a | |||||||
| C49C3.8b | |||||||||
| Corresponding_CDS_history | C49C3.8:wp172 | ||||||||
| Corresponding_transcript | C49C3.8a.1 | ||||||||
| C49C3.8b.1 | |||||||||
| Other_sequence | CBC06396_1 | ||||||||
| Associated_feature | WBsf646612 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00042779 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029971 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012129 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042786 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013488 | ||||||||
| Expr1033562 | |||||||||
| Expr1146770 | |||||||||
| Expr2001768 | |||||||||
| Expr2019996 | |||||||||
| Drives_construct | WBCnstr00033164 | ||||||||
| Construct_product | WBCnstr00033164 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (99) | |||||||||
| SAGE_tag | SAGE:ccgatagaagcttgtat | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:aatgatttgg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ctcgaatcctagtgtat | Strand | Antisense | |||||||
| SAGE:cgccgcttgc | Strand | Antisense | |||||||
| SAGE:aatgatttggaagatct | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:cgccgcttgcgatacgg | Strand | Antisense | |||||||
| SAGE:ctcgaatcct | Strand | Antisense | |||||||
| Interaction | WBInteraction000281816 | ||||||||
| WBInteraction000310677 | |||||||||
| WBInteraction000326798 | |||||||||
| WBInteraction000346426 | |||||||||
| WBInteraction000392170 | |||||||||
| WBInteraction000435856 | |||||||||
| WBInteraction000452877 | |||||||||
| Map_info | Positive | Positive_clone | C49C3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 16.4941 | |||||||
| Method | Gene |
