WormBase Tree Display for Gene: WBGene00016594
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| WBGene00016594 | SMap | S_parent | Sequence | C42D4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | srlf-7 | Person_evidence | WBPerson260 | |||||
| Laboratory_evidence | OH | ||||||||
| Sequence_name | C42D4.1 | ||||||||
| Molecular_name | C42D4.1 | ||||||||
| C42D4.1.1 | |||||||||
| CE04189 | |||||||||
| Other_name | C42D4.1 | ||||||||
| CELE_C42D4.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | srlf-7 | ||||||||
| DB_info | Database | AceView | gene | 4H953 | |||||
| WormQTL | gene | WBGene00016594 | |||||||
| WormFlux | gene | WBGene00016594 | |||||||
| NDB | locus_tag | CELE_C42D4.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016594|UniProtKB=Q18577 | |||||||
| family | PTHR21593 | ||||||||
| NCBI | gene | 183403 | |||||||
| RefSeq | protein | NM_068735.6 | |||||||
| TREEFAM | TREEFAM_ID | TF315757 | |||||||
| TrEMBL | UniProtAcc | Q18577 | |||||||
| UniProt_GCRP | UniProtAcc | Q18577 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 Oct 2022 15:59:20 | WBPerson21950 | Name_change | CGC_name | srlf-7 | ||||
| Other_name | C42D4.1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srlf | ||||||||
| Allele (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (20) | |||||||||
| Paralog (38) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including AVA; excretory gland cell; head mesodermal cell; nerve ring neurons; and pharyngeal muscle cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; tiling array; and RNA-seq studies. Is affected by twenty-five chemicals including 1-methylnicotinamide; rotenone; and juglone based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Phosphorylation site; SXP/RAL-2 family protein Ani s 5-like, metal-binding domain; and SXP/RAL-2 family protein Ani s 5-like, cation-binding domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C42D4.1 | |||||||
| Corresponding_transcript | C42D4.1.1 | ||||||||
| Other_sequence | CJC01509_1 | ||||||||
| CR02127 | |||||||||
| CRC03443_1 | |||||||||
| CBC01089_1 | |||||||||
| CBC01089_2 | |||||||||
| Associated_feature | WBsf646070 | ||||||||
| WBsf660267 | |||||||||
| WBsf228513 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00029746 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042351 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011867 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025330 | ||||||||
| Expr1037123 | |||||||||
| Expr1146337 | |||||||||
| Expr2001589 | |||||||||
| Expr2019813 | |||||||||
| Drives_construct | WBCnstr00027953 | ||||||||
| Construct_product | WBCnstr00027953 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (274) | |||||||||
| Interaction (202) | |||||||||
| Map_info | Positive | Positive_clone | C42D4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 3.29279 | |||||||
| Reference | WBPaper00033099 | ||||||||
| WBPaper00065275 | |||||||||
| Method | Gene |
