WormBase Tree Display for Gene: WBGene00009711
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| WBGene00009711 | SMap | S_parent | Sequence | F44G4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F44G4.1 | |||||||
| Molecular_name | F44G4.1 | ||||||||
| F44G4.1.1 | |||||||||
| CE28332 | |||||||||
| Other_name | CELE_F44G4.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | F44G4.1 | ||||||||
| DB_info | Database | AceView | gene | 2J285 | |||||
| WormQTL | gene | WBGene00009711 | |||||||
| WormFlux | gene | WBGene00009711 | |||||||
| NDB | locus_tag | CELE_F44G4.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009711|UniProtKB=P54073 | |||||||
| family | PTHR22734 | ||||||||
| NCBI | gene | 174434 | |||||||
| RefSeq | protein | NM_063517.8 | |||||||
| SwissProt | UniProtAcc | P54073 | |||||||
| TREEFAM | TREEFAM_ID | TF105897 | |||||||
| UniProt_GCRP | UniProtAcc | P54073 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (27) | |||||||||
| Strain | WBStrain00035917 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00048165 | ||||||||
| 00048166 | |||||||||
| 00048167 | |||||||||
| 00048168 | |||||||||
| 00117329 | |||||||||
| 00117330 | |||||||||
| 00117331 | |||||||||
| Contained_in_operon | CEOP2404 | ||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00014083 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable rRNA primary transcript binding activity. Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to be located in nucleolus. Predicted to be part of preribosome, large subunit precursor. Is an ortholog of human RPF1 (ribosome production factor 1 homolog). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F44G4.1 | |||||||
| Corresponding_CDS_history | F44G4.1:wp52 | ||||||||
| F44G4.1:wp54 | |||||||||
| Corresponding_transcript | F44G4.1.1 | ||||||||
| Other_sequence (74) | |||||||||
| Associated_feature | WBsf221842 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00092581 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00071192 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00025507 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008801 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047337 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028495 | ||||||||
| Expr1034246 | |||||||||
| Expr1151190 | |||||||||
| Expr2003734 | |||||||||
| Expr2021954 | |||||||||
| Drives_construct | WBCnstr00031975 | ||||||||
| Construct_product | WBCnstr00031975 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (116) | |||||||||
| SAGE_tag | SAGE:ggagagattg | Strand | Antisense | ||||||
| SAGE:ccagatgagg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:caaccctatcatctttg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ccagatgaggtggattc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ggagagattgagatatt | Strand | Antisense | |||||||
| SAGE:caaccctatc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (188) | |||||||||
| Map_info | Positive | Positive_clone | F44G4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 0.956742 | |||||||
| Reference | WBPaper00017956 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065861 | |||||||||
| Method | Gene |
