WormBase Tree Display for Gene: WBGene00011979

WBGene00011979 SMap: S_parent: Sequence: T24B8
  Identity: Version: 2
    Name: CGC_name: sysm-1
      Sequence_name: T24B8.5
      Molecular_name: T24B8.5
        T24B8.5.1
        CE41161
      Other_name: CELE_T24B8.5 Accession_evidence: NDB BX284602
      Public_name: sysm-1
    DB_info: Database: AceView gene 2J372
        WormQTL gene WBGene00011979
        WormFlux gene WBGene00011979
        NDB locus_tag CELE_T24B8.5
        Panther gene CAEEL|WormBase=WBGene00011979|UniProtKB=Q22714
          family PTHR21724
        NCBI gene 188838
        RefSeq protein NM_063536.5
        TREEFAM TREEFAM_ID TF319943
        TrEMBL UniProtAcc Q22714
        UniProt_GCRP UniProtAcc Q22714
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 30 Mar 2020 18:23:32 WBPerson1983 Name_change: CGC_name: sysm-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sysm
    Allele (18)
    Strain: WBStrain00037353
    RNASeq_FPKM (74)
    GO_annotation: 00076167
      00105579
      00105590
    Ortholog: WBGene00053235 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00026151 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00146796 Caenorhabditis brenneri From_analysis: TreeFam
      CSP26.g16027 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP31.g27304 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP40.g985 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-T24B8.5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      FL83_20686 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005659 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrII_pilon.g5403 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: T24B8.5 encodes an ShK-like toxin peptide containing a domain rich in cysteine residues found in the sea anemone potassium channel inhibitor ShK; T24B8.5 expression is regulated by the PMK-1/p38 MAPK signaling pathway and the ATF-7 transcription factor, which is a downstream target of PMK-1. Paper_evidence: WBPaper00035315
            WBPaper00036086
          Curator_confirmed: WBPerson1843
          Date_last_updated: 07 Apr 2010 00:00:00
      Automated_description: Involved in antibacterial innate immune response. Expressed in intestine. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T24B8.5
    Corresponding_CDS_history: T24B8.5:wp176
    Corresponding_transcript: T24B8.5.1
    Associated_feature: WBsf650399
      WBsf988929
      WBsf988930
      WBsf988931
      WBsf988932
      WBsf1012799
      WBsf1012800
      WBsf223601
  Experimental_info: RNAi_result: WBRNAi00054021 Inferred_automatically: RNAi_primary
      WBRNAi00082506 Inferred_automatically: RNAi_primary
      WBRNAi00019134 Inferred_automatically: RNAi_primary
      WBRNAi00095221 Inferred_automatically: RNAi_primary
      WBRNAi00035909 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr12209
      Expr12687
      Expr14285
      Expr1010784
      Expr1157565
      Expr2006438
      Expr2024658
    Drives_construct: WBCnstr00005842
      WBCnstr00005992
      WBCnstr00009567
      WBCnstr00030230
    Construct_product: WBCnstr00030230
    Microarray_results (23)
    Expression_cluster (389)
    Interaction (22)
    WBProcess: WBbiopr:00000039
  Map_info: Map: II Position: 1.00085
    Positive: Positive_clone: T24B8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (12)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene