WormBase Tree Display for Gene: WBGene00001713
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| WBGene00001713 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F42C5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-4 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F42C5.7 | ||||||||
| Molecular_name | F42C5.7 | ||||||||
| F42C5.7.1 | |||||||||
| CE34016 | |||||||||
| Other_name | CELE_F42C5.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | grl-4 | ||||||||
| DB_info | Database | AceView | gene | 4I74 | |||||
| WormQTL | gene | WBGene00001713 | |||||||
| WormFlux | gene | WBGene00001713 | |||||||
| NDB | locus_tag | CELE_F42C5.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001713|UniProtKB=Q20327 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 3564844 | |||||||
| RefSeq | protein | NM_001383117.2 | |||||||
| TREEFAM | TREEFAM_ID | TF315611 | |||||||
| TrEMBL | UniProtAcc | Q20327 | |||||||
| UniProt_GCRP | UniProtAcc | Q20327 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (23) | |||||||||
| Strain | WBStrain00003414 | ||||||||
| WBStrain00031801 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (27) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-4 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central proline-rich low-complexity region, and a C-terminalGround-like (Grl) domain; GRL-4 is expressed in pharynx, reproductivesystem, vulva, larval neurons, and larval rectal epithelium; the Grldomain is predicted to form a cysteine-crosslinked protein involved inintercellular signalling, and it has subtle similarity to the N-terminalHedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Expressed in anterior arcade cell; head; hypodermis; and vulval cell. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F42C5.7 | |||||||
| Corresponding_CDS_history | F42C5.7:wp100 | ||||||||
| Corresponding_transcript | F42C5.7.1 | ||||||||
| Other_sequence (36) | |||||||||
| Associated_feature | WBsf651899 | ||||||||
| WBsf655516 | |||||||||
| WBsf996935 | |||||||||
| WBsf230246 | |||||||||
| WBsf230247 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00025479 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091334 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014818 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00025478 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027335 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047089 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032134 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4443 | ||||||||
| Expr6040 | |||||||||
| Expr1017052 | |||||||||
| Expr1031025 | |||||||||
| Expr1150954 | |||||||||
| Expr2012269 | |||||||||
| Expr2030505 | |||||||||
| Drives_construct | WBCnstr00003881 | ||||||||
| WBCnstr00012007 | |||||||||
| WBCnstr00036747 | |||||||||
| Construct_product | WBCnstr00036747 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (259) | |||||||||
| Interaction | WBInteraction000345284 | ||||||||
| WBInteraction000374043 | |||||||||
| WBInteraction000519757 | |||||||||
| WBInteraction000548041 | |||||||||
| WBInteraction000548042 | |||||||||
| WBInteraction000563451 | |||||||||
| WBInteraction000571609 | |||||||||
| Map_info | Map | IV | Position | 3.31855 | Error | 0.000782 | |||
| Positive | Positive_clone | F42C5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4912 | |||||||
| 5640 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
