WormBase Tree Display for Gene: WBGene00010700
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| WBGene00010700 | SMap | S_parent | Sequence | K09A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nipi-3 | Person_evidence | WBPerson168 | |||||
| Sequence_name | K09A9.1 | ||||||||
| Molecular_name | K09A9.1 | ||||||||
| K09A9.1.1 | |||||||||
| CE42581 | |||||||||
| Other_name | CELE_K09A9.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nipi-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Apr 2008 15:10:27 | WBPerson2970 | Name_change | CGC_name | nipi-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nipi | ||||||||
| Allele (47) | |||||||||
| Strain | WBStrain00003315 | ||||||||
| WBStrain00021982 | |||||||||
| WBStrain00021978 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00007007 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00010681 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00011304 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | nipi-3 encodes a kinase similar to the human kinase Tribbles homolog 1; nipi-3 functions in the innate immune response, likely upstream of the SEK-1 MAPKK, to upregulate expression of NLP-29, an antimicrobial peptide, in response to fungal infection. | Paper_evidence | WBPaper00031666 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 04 Feb 2011 00:00:00 | ||||||||
| Automated_description | Enables DNA-binding transcription factor binding activity. Involved in defense response to other organism and regulation of gene expression. Predicted to be located in nucleus. Expressed in CAN; hypodermis; motor neurons; pharynx; and touch receptor neurons. Is an ortholog of human TRIB1 (tribbles pseudokinase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K09A9.1 | |||||||
| Corresponding_CDS_history | K09A9.1:wp98 | ||||||||
| K09A9.1:wp190 | |||||||||
| Corresponding_transcript | K09A9.1.1 | ||||||||
| Other_sequence | CR04824 | ||||||||
| CRC00651_1 | |||||||||
| CBC12317_1 | |||||||||
| CJC06811_1 | |||||||||
| CR06179 | |||||||||
| Associated_feature | WBsf648817 | ||||||||
| WBsf648818 | |||||||||
| WBsf655238 | |||||||||
| WBsf655239 | |||||||||
| WBsf663659 | |||||||||
| WBsf663660 | |||||||||
| WBsf982306 | |||||||||
| WBsf1008281 | |||||||||
| Experimental_info | RNAi_result (27) | ||||||||
| Expr_pattern | Chronogram892 | ||||||||
| Expr6374 | |||||||||
| Expr8070 | |||||||||
| Expr12563 | |||||||||
| Expr13665 | |||||||||
| Expr1027431 | |||||||||
| Expr1034682 | |||||||||
| Expr1154069 | |||||||||
| Expr2014263 | |||||||||
| Expr2032503 | |||||||||
| Drives_construct | WBCnstr00000508 | ||||||||
| WBCnstr00003786 | |||||||||
| WBCnstr00006335 | |||||||||
| WBCnstr00007217 | |||||||||
| WBCnstr00013088 | |||||||||
| WBCnstr00031209 | |||||||||
| Construct_product | WBCnstr00000508 | ||||||||
| WBCnstr00006335 | |||||||||
| WBCnstr00007219 | |||||||||
| WBCnstr00007220 | |||||||||
| WBCnstr00007221 | |||||||||
| WBCnstr00007222 | |||||||||
| WBCnstr00031209 | |||||||||
| Regulate_expr_cluster | WBPaper00050515:nipi-3(fr4)_downregulated | ||||||||
| WBPaper00050515:nipi-3(fr4)_upregulated | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (205) | |||||||||
| Interaction (13) | |||||||||
| WBProcess | WBbiopr:00000001 | ||||||||
| WBbiopr:00000039 | |||||||||
| Map_info | Map | X | Position | 22.9309 | Error | 0.001583 | |||
| Positive | Positive_clone | K09A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
