WormBase Tree Display for Gene: WBGene00007547
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| WBGene00007547 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-154 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C13C4.2 | ||||||||
| Molecular_name | C13C4.2 | ||||||||
| C13C4.2.1 | |||||||||
| CE40299 | |||||||||
| Other_name | CELE_C13C4.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-154 | ||||||||
| DB_info | Database | AceView | gene | 5M581 | |||||
| WormQTL | gene | WBGene00007547 | |||||||
| WormFlux | gene | WBGene00007547 | |||||||
| NDB | locus_tag | CELE_C13C4.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007547|UniProtKB=O01931 | |||||||
| family | PTHR24083 | ||||||||
| NCBI | gene | 182565 | |||||||
| RefSeq | protein | NM_073636.5 | |||||||
| SwissProt | UniProtAcc | O01931 | |||||||
| TREEFAM | TREEFAM_ID | TF321591 | |||||||
| UniProt_GCRP | UniProtAcc | O01931 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Jul 2005 10:29:11 | WBPerson2970 | Name_change | CGC_name | nhr-154 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (44) | |||||||||
| Strain | WBStrain00036255 | ||||||||
| WBStrain00036283 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP5517 | ||||||||
| Ortholog (46) | |||||||||
| Paralog (42) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in response to starvation. Predicted to be located in nucleus. Expressed in alimentary muscle; head neurons; intestine; pharynx; and rectal valve cell. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C13C4.2 | |||||||
| Corresponding_CDS_history | C13C4.2:wp160 | ||||||||
| Corresponding_transcript | C13C4.2.1 | ||||||||
| Other_sequence | CJC11645_1 | ||||||||
| JI169635.1 | |||||||||
| Associated_feature | WBsf647330 | ||||||||
| WBsf978878 | |||||||||
| WBsf232600 | |||||||||
| WBsf232601 | |||||||||
| WBsf232602 | |||||||||
| Transcription_factor | WBTranscriptionFactor000803 | ||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr9036 | ||||||||
| Expr9038 | |||||||||
| Expr1023599 | |||||||||
| Expr1033245 | |||||||||
| Expr1144496 | |||||||||
| Expr2014054 | |||||||||
| Expr2032294 | |||||||||
| Drives_construct | WBCnstr00013683 | ||||||||
| WBCnstr00033657 | |||||||||
| Construct_product | WBCnstr00016831 | ||||||||
| WBCnstr00033657 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction | WBInteraction000535064 | ||||||||
| WBInteraction000535100 | |||||||||
| WBInteraction000535384 | |||||||||
| Map_info | Map | V | Position | 3.64317 | Error | 0.001118 | |||
| Positive | Positive_clone | C13C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00034540 | ||||||||
| WBPaper00036257 | |||||||||
| WBPaper00039677 | |||||||||
| WBPaper00056971 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
