WormBase Tree Display for Gene: WBGene00021975
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| WBGene00021975 | SMap | S_parent | Sequence | Y58A7A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y58A7A.1 | |||||||
| Molecular_name | Y58A7A.1a | ||||||||
| Y58A7A.1a.1 | |||||||||
| CE26194 | |||||||||
| Y58A7A.1b | |||||||||
| CE45059 | |||||||||
| Y58A7A.1b.1 | |||||||||
| Other_name | Y58A7A.e | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y58A7A.1 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | Y58A7A.1 | ||||||||
| DB_info | Database | AceView | gene | 5F544 | |||||
| WormQTL | gene | WBGene00021975 | |||||||
| WormFlux | gene | WBGene00021975 | |||||||
| NDB | locus_tag | CELE_Y58A7A.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021975|UniProtKB=D6RYD3 | |||||||
| family | PTHR12483 | ||||||||
| NCBI | gene | 190381 | |||||||
| RefSeq | protein | NM_001269127.5 | |||||||
| NM_001269128.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF315142 | |||||||
| TrEMBL | UniProtAcc | D6RYD3 | |||||||
| Q966A8 | |||||||||
| UniProt_GCRP | UniProtAcc | D6RYD3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (46) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00007714 | ||||||||
| 00007715 | |||||||||
| 00007716 | |||||||||
| 00007717 | |||||||||
| 00007718 | |||||||||
| 00007719 | |||||||||
| 00126154 | |||||||||
| 00126155 | |||||||||
| 00126156 | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00010274 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010277 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017170 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00017852 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017954 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019674 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044107 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00045053 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00045052 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable copper ion transmembrane transporter activity. Predicted to be involved in copper ion transmembrane transport. Predicted to be located in late endosome membrane. Is an ortholog of human SLC31A1 (solute carrier family 31 member 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y58A7A.1a | |||||||
| Y58A7A.1b | |||||||||
| Corresponding_transcript | Y58A7A.1a.1 | ||||||||
| Y58A7A.1b.1 | |||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf652604 | ||||||||
| WBsf999930 | |||||||||
| WBsf233641 | |||||||||
| WBsf233642 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057724 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037621 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012990 | ||||||||
| Expr1161152 | |||||||||
| Expr2008086 | |||||||||
| Expr2026324 | |||||||||
| Drives_construct | WBCnstr00024381 | ||||||||
| Construct_product | WBCnstr00024381 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (170) | |||||||||
| Interaction | WBInteraction000032449 | ||||||||
| WBInteraction000570769 | |||||||||
| WBInteraction000586340 | |||||||||
| Map_info | Positive | Positive_clone | Y58A7A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | -2.96782 | |||||||
| Reference | WBPaper00055090 | ||||||||
| Method | Gene |
