WormBase Tree Display for Gene: WBGene00044107
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| WBGene00044107 | SMap | S_parent | Sequence | F58G6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | chca-1 | Paper_evidence | WBPaper00054565 | |||||
| Person_evidence | WBPerson34348 | ||||||||
| Sequence_name | F58G6.9 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_F58G6.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | chca-1 | ||||||||
| DB_info | Database | AceView | gene | 4K415 | |||||
| WormFlux | gene | WBGene00044107 | |||||||
| NDB | locus_tag | CELE_F58G6.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00044107|UniProtKB=Q5CZ44 | |||||||
| family | PTHR12483 | ||||||||
| NCBI | gene | 3565521 | |||||||
| RefSeq | protein | NM_001129310.3 | |||||||
| NM_001268485.4 | |||||||||
| NM_001028076.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF315142 | |||||||
| TrEMBL | UniProtAcc | A5JYS6 | |||||||
| C6KRJ4 | |||||||||
| Q5CZ44 | |||||||||
| UniProt_GCRP | UniProtAcc | Q5CZ44 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 04 Feb 2005 13:21:42 | WBPerson1983 | Event | Split_from | WBGene00010273 | ||
| 2 | 12 Jan 2023 20:48:33 | WBPerson51134 | Name_change | CGC_name | chca-1 | ||||
| Split_from | WBGene00010273 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | chca | ||||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00004687 | ||||||||
| 00004688 | |||||||||
| 00004689 | |||||||||
| 00004690 | |||||||||
| 00004691 | |||||||||
| 00004692 | |||||||||
| 00145985 | |||||||||
| 00145986 | |||||||||
| 00145987 | |||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00010274 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010277 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017170 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00017852 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017954 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019674 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021975 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00045053 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00045052 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable copper ion transmembrane transporter activity. Predicted to be involved in copper ion transmembrane transport. Predicted to be located in late endosome membrane. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F58G6.9a | |||||||
| F58G6.9b | |||||||||
| F58G6.9c | |||||||||
| Corresponding_transcript | F58G6.9a.1 | ||||||||
| F58G6.9a.2 | |||||||||
| F58G6.9b.1 | |||||||||
| F58G6.9b.2 | |||||||||
| F58G6.9c.1 | |||||||||
| F58G6.9c.2 | |||||||||
| Associated_feature | WBsf646243 | ||||||||
| WBsf646244 | |||||||||
| WBsf646245 | |||||||||
| WBsf981807 | |||||||||
| WBsf1017986 | |||||||||
| WBsf228852 | |||||||||
| WBsf228853 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00112358 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00049057 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016019 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13774 | ||||||||
| Expr1019796 | |||||||||
| Expr1152805 | |||||||||
| Expr2004421 | |||||||||
| Expr2022644 | |||||||||
| Drives_construct | WBCnstr00023759 | ||||||||
| Construct_product | WBCnstr00023759 | ||||||||
| WBCnstr00039989 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (288) | |||||||||
| Map_info | Map | IV | Position | 4.34716 | |||||
| Positive | Positive_clone | F58G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00065331 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
