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WormBase Tree Display for Expression_cluster: WBPaper00026952:class_B

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Name Class

WBPaper00026952:class_BDescriptionClass B gene expression showed up regulation in lin-14(lf) in L1, no change in lin-4(lf) in L2.
SpeciesCaenorhabditis elegans
AlgorithmRaw data from each experiment were downloaded from the Stanford Microarray Database into Excel files and processed as follows: (i) sort by Spot Flag and discard any rows where the Spot Flag value was nonzero, indicating a bad PCR; (ii) sort by Failed and discard any rows where the Failed value was nonzero, indicating abnormal hybridization; (iii) import into a common file for each type of experiment (i.e., lin-14 or lin-4) the columns from each raw experimental file [RAT2(R/G), which shows a log base 2 transformed ratio of normalized red/green signal for each spot; name of spot (Wormbase designation); chromosome location and description (www.wormbase.org)]; (iv) calculate an average RAT2(R/G) based on the 2 or 3 values (avg; any rows which had only one good experimental value were discarded); (v) calculate a standard deviation (stdev) for the average value; (vi) calculate a t value for each spot by using the formula t = avg*[sqrt(n - 1)]/stdev, where n is the number of experiments for which good data exist, sqrt is square root, and stdev is standard deviation; (vii) sort by absolute t value and discard any rows with a t value below 4.303 (below 95% confidence interval for three experiments) or below 12.706 (below 95% confidence interval for two experiments); (viii) sort by absolute average value and discard any rows with average values below 1.0 (less than twofold change compared to control).
ReferenceWBPaper00026952
Microarray_resultsSMD_B0222.2
SMD_B0238.2
SMD_B0238.5
SMD_B0284.1
SMD_B0432.12
SMD_B0507.6
SMD_B0547.2
SMD_C01A2.1
SMD_C01G5.4
SMD_C01G8.7
SMD_C02A12.2
SMD_C02E7.1
SMD_C02E7.3
SMD_C02E7.5
SMD_C03G6.5
SMD_C04E12.10
SMD_C04F6.1
SMD_C04G6.3
SMD_C05C8.4
SMD_C05C8.5
SMD_C05D10.3
SMD_C05D2.3
SMD_C05D2.5
SMD_C05E11.4
SMD_C05E4.11
SMD_C05E4.9
SMD_C06A5.6
SMD_C06C6.2
SMD_C06E4.6
SMD_C06E4.8
SMD_C07G1.1
SMD_C08B6.5
SMD_C08E3.4
SMD_C08F8.5
SMD_C09B9.2
SMD_C13A2.4
SMD_C13D9.1
SMD_C13D9.3
SMD_C13D9.7
SMD_C13D9.8
SMD_C13G5.2
SMD_C14C6.10
SMD_C14C6.12
SMD_C15B12.2
SMD_C16C4.3
SMD_C16C4.6
SMD_C17B7.5
SMD_C17E4.3
SMD_C17H1.7
SMD_C17H12.5
SMD_C17H12.9
SMD_C18B10.1
SMD_C18C4.2
SMD_C18F10.4
SMD_C23H4.6
SMD_C25D7.2
SMD_C25E10.1
SMD_C33A12.10
SMD_C33A12.16
SMD_C33D9.2
SMD_C33D9.3
SMD_C34C6.7
SMD_C36C5.6
SMD_C41G6.3
SMD_C43F9.4
SMD_C43G2.3
SMD_C43H6.9
SMD_C44B7.6
SMD_C44B9.5
SMD_C44C3.4
SMD_C44H9.4
SMD_C45G7.3
SMD_C45G9.9
SMD_C49G7.7
SMD_C50F7.5
SMD_C50H2.4
SMD_C51E3.4
SMD_C53A5.11
SMD_C54C8.5
SMD_C54C8.6
SMD_C54D10.4
SMD_C54D10.7
SMD_C54F6.10
SMD_C54G10.1
SMD_C55B6.4
SMD_E02C12.12
SMD_E03H12.9
SMD_EEED8.11
SMD_F02E8.4
SMD_F07C4.10
SMD_F09F3.1
SMD_F10G2.1
SMD_F10G2.3
SMD_F10G2.7
SMD_F11A5.7
SMD_F13A7.8
SMD_F14B8.3
SMD_F15H10.6
SMD_F15H10.7
SMD_F16H6.7
SMD_F17A2.12
SMD_F17B5.3
SMD_F17B5.4
SMD_F18A12.6
SMD_F18E2.4
SMD_F18E3.1
SMD_F18E3.4
SMD_F19B10.11
SMD_F19B10.7
SMD_F20G2.4
SMD_F21E9.5
SMD_F22B3.5
SMD_F25B3.2
SMD_F25E2.2
SMD_F26G5.10
SMD_F28A10.4
SMD_F28C12.3
SMD_F28F9.4
SMD_F29C4.6
SMD_F29G9.7
SMD_F30A10.4
SMD_F31A3.1
SMD_F31C3.3
SMD_F31E9.1
SMD_F31F4.14
SMD_F31F4.8
SMD_F32B4.4
SMD_F32B4.8
SMD_F32D8.2
SMD_F32G8.1
SMD_F32H2.8
SMD_F33H1.4
SMD_F33H12.4
SMD_F34D10.2
SMD_F35A5.4
SMD_F35C5.3
SMD_F35E2.7
SMD_F35E2.9
SMD_F35E8.10
SMD_F35E8.13
SMD_F35E8.3
SMD_F35F10.6
SMD_F36G9.12
SMD_F36G9.8
SMD_F36H1.3
SMD_F36H12.16
SMD_F37C12.15
SMD_F38E1.2
SMD_F38H4.4
SMD_F38H4.7
SMD_F39D8.4
SMD_F39E9.7
SMD_F39H11.2
SMD_F40F9.4
SMD_F41E7.3
SMD_F42A8.3
SMD_F42F12.2
SMD_F42H11.1
SMD_F43G6.6
SMD_F44D12.11
SMD_F44F1.1
SMD_F44F1.5
SMD_F44F4.3
SMD_F44F4.6
SMD_F44G3.1
SMD_F44G3.7
SMD_F44G4.7
SMD_F45C12.13
SMD_F45C12.16
SMD_F45C12.8
SMD_F45H11.3
SMD_F46F2.4
SMD_F47B3.8
SMD_F47B8.4
SMD_F47C10.3
SMD_F47C12.4
SMD_F47D2.3
SMD_F47D2.9
SMD_F48B9.3
SMD_F48G7.2
SMD_F49C12.3
SMD_F49H6.5
SMD_F52E10.5
SMD_F52F12.1
SMD_F52H3.6
SMD_F53B2.5
SMD_F53B6.6
SMD_F53F4.4
SMD_F53F4.8
SMD_F53F4.9
SMD_F54D5.1
SMD_F54H5.2
SMD_F55H12.4
SMD_F56B6.1
SMD_F56H6.5
SMD_F57A8.7
SMD_F58B3.6
SMD_F58D2.1
SMD_F58E1.12
SMD_F58E1.13
SMD_F59E11.15
SMD_F59E11.7
SMD_H05L14.2
SMD_H12C20.4
SMD_K02B9.1
SMD_K02D7.3
SMD_K03B8.1
SMD_K03H1.1
SMD_K05F1.3
SMD_K06H6.4
SMD_K07C6.8
SMD_K08E4.5
SMD_K12B6.1
SMD_K12B6.2
SMD_K12B6.5
SMD_K12B6.8
SMD_K12D9.1
SMD_K12D9.4
SMD_K12D9.7
SMD_K12D9.8
SMD_M01D1.9
SMD_M176.5
SMD_R03H4.4
SMD_R04D3.3
SMD_R06B10.1
SMD_R07B1.2
SMD_R07B5.6
SMD_R07C3.4
SMD_R09E10.1
SMD_R11G11.13
SMD_R13D7.10
SMD_R160.3
SMD_T01G5.5
SMD_T01G5.7
SMD_T01G6.5
SMD_T01H10.2
SMD_T01H3.4
SMD_T03E6.3
SMD_T04A11.10
SMD_T05C12.3
SMD_T05H4.15
SMD_T06A1.1
SMD_T06C12.8
SMD_T08G3.7
SMD_T09F5.10
SMD_T09F5.8
SMD_T10C6.3
SMD_T10E10.1
SMD_T10H10.3
SMD_T10H4.3
SMD_T10H4.6
SMD_T10H9.1
SMD_T11A5.4
SMD_T11F9.3
SMD_T12C9.1
SMD_T12C9.3
SMD_T13A10.12
SMD_T13A10.13
SMD_T13A10.6
SMD_T13B5.1
SMD_T13F3.2
SMD_T14B4.3
SMD_T14G12.1
SMD_T15D6.1
SMD_T16H12.3
SMD_T19B10.10
SMD_T19C4.5
SMD_T20B6.1
SMD_T20D4.19
SMD_T21B4.10
SMD_T21B4.5
SMD_T21E8.3
SMD_T21H8.2
SMD_T25B9.6
SMD_T26E4.3
SMD_T28A11.10
SMD_T28A11.19
SMD_T28A11.3
SMD_T28A11.8
SMD_W08A12.4
SMD_W09D6.2
SMD_W09G12.7
SMD_W10D5.1
SMD_Y20C6A.1
SMD_Y32F6A.2
SMD_Y43E12A.3
SMD_Y48E1B.4
SMD_Y51A2A.1
SMD_Y51A2A.7
SMD_Y73C8C.3
SMD_ZC168.2
SMD_ZC196.6
SMD_ZC477.2
SMD_ZK1053.5
SMD_ZK1225.5
SMD_ZK228.1
SMD_ZK328.4
SMD_ZK563.1
SMD_ZK596.2
SMD_ZK617.2
SMD_ZK617.3
SMD_ZK666.5
SMD_ZK666.8
SMD_ZK75.1
SMD_ZK863.5
GeneWBGene00015054
WBGene00015077
WBGene00015069
WBGene00007131
WBGene00045189
WBGene00015193
WBGene00015223
WBGene00015253
WBGene00007213
WBGene00015306
WBGene00002717
WBGene00044088
WBGene00015338
WBGene00005245
WBGene00005247
WBGene00005248
WBGene00005403
WBGene00015439
WBGene00006810
WBGene00006929
WBGene00004040
WBGene00001563
WBGene00015462
WBGene00015479
WBGene00015467
WBGene00001514
WBGene00000133
WBGene00005612
WBGene00001564
WBGene00015504
WBGene00006264
WBGene00015535
WBGene00015537
WBGene00006620
WBGene00007426
WBGene00015596
WBGene00007446
WBGene00219217
WBGene00015627
WBGene00015721
WBGene00005657
WBGene00005659
WBGene00003573
WBGene00003574
WBGene00015747
WBGene00005585
WBGene00015756
WBGene00015763
WBGene00015784
WBGene00015827
WBGene00015830
WBGene00015879
WBGene00007643
WBGene00007660
WBGene00015931
WBGene00015934
WBGene00015958
WBGene00000477
WBGene00005159
WBGene00007694
WBGene00014681
WBGene00016091
WBGene00005667
WBGene00007889
WBGene00007897
WBGene00007898
WBGene00007919
WBGene00016475
WBGene00005762
WBGene00008072
WBGene00016612
WBGene00001618
WBGene00016628
WBGene00043996
WBGene00005307
WBGene00008099
WBGene00016670
WBGene00016680
WBGene00016785
WBGene00269425
WBGene00016845
WBGene00008240
WBGene00008250
WBGene00008269
WBGene00008293
WBGene00003098
WBGene00008299
WBGene00008301
WBGene00006097
WBGene00008319
WBGene00016940
WBGene00017097
WBGene00017115
WBGene00017139
WBGene00017177
WBGene00017203
WBGene00006021
WBGene00017362
WBGene00017364
WBGene00017366
WBGene00008675
WBGene00005577
WBGene00003987
WBGene00008873
WBGene00008874
WBGene00008897
WBGene00005118
WBGene00008907
WBGene00044058
WBGene00017555
WBGene00008937
WBGene00017564
WBGene00005815
WBGene00017590
WBGene00005988
WBGene00003543
WBGene00045122
WBGene00009099
WBGene00017780
WBGene00017845
WBGene00017877
WBGene00005045
WBGene00000009
WBGene00017928
WBGene00017929
WBGene00000980
WBGene00017933
WBGene00009263
WBGene00000026
WBGene00009285
WBGene00009295
WBGene00005688
WBGene00005594
WBGene00009314
WBGene00009318
WBGene00009327
WBGene00005112
WBGene00009345
WBGene00009365
WBGene00005586
WBGene00045484
WBGene00018026
WBGene00009391
WBGene00009414
WBGene00009416
WBGene00009423
WBGene00018056
WBGene00009488
WBGene00005513
WBGene00009492
WBGene00018130
WBGene00005073
WBGene00018699
WBGene00009548
WBGene00006415
WBGene00219939
WBGene00003532
WBGene00018199
WBGene00195026
WBGene00195027
WBGene00195028
WBGene00249812
WBGene00006577
WBGene00006230
WBGene00009619
WBGene00009627
WBGene00006979
WBGene00009646
WBGene00005013
WBGene00014375
WBGene00009693
WBGene00009697
WBGene00009702
WBGene00001626
WBGene00006158
WBGene00009708
WBGene00009716
WBGene00018444
WBGene00018447
WBGene00018439
WBGene00009744
WBGene00009788
WBGene00003072
WBGene00009805
WBGene00018541
WBGene00018548
WBGene00018554
WBGene00005406
WBGene00018589
WBGene00018614
WBGene00009873
WBGene00009908
WBGene00002051
WBGene00003842
WBGene00009948
WBGene00009956
WBGene00009961
WBGene00009988
WBGene00009991
WBGene00005089
WBGene00003960
WBGene00018839
WBGene00010134
WBGene00010135
WBGene00006928
WBGene00010166
WBGene00010182
WBGene00010232
WBGene00010240
WBGene00019043
WBGene00019044
WBGene00006144
WBGene00019113
WBGene00010367
WBGene00005982
WBGene00010492
WBGene00000675
WBGene00017578
WBGene00003535
WBGene00001603
WBGene00019406
WBGene00019452
WBGene00005956
WBGene00045036
WBGene00019666
WBGene00019667
WBGene00005640
WBGene00019672
WBGene00019675
WBGene00005862
WBGene00005866
WBGene00005861
WBGene00019704
WBGene00010946
WBGene00019850
WBGene00011011
WBGene00019912
WBGene00002270
WBGene00005699
WBGene00019920
WBGene00011171
WBGene00005854
WBGene00020055
WBGene00020120
WBGene00006215
WBGene00011342
WBGene00020152
WBGene00011355
WBGene00011350
WBGene00011396
WBGene00005680
WBGene00045131
WBGene00011467
WBGene00020276
WBGene00020277
WBGene00011515
WBGene00011619
WBGene00011669
WBGene00005483
WBGene00005934
WBGene00000744
WBGene00015381
WBGene00020427
WBGene00005769
WBGene00005764
WBGene00020424
WBGene00011703
WBGene00000007
WBGene00003539
WBGene00003615
WBGene00006657
WBGene00005743
WBGene00005744
WBGene00005740
WBGene00004902
WBGene00003717
WBGene00011750
WBGene00020500
WBGene00011778
WBGene00011813
WBGene00008551
WBGene00011839
WBGene00020598
WBGene00020624
WBGene00005294
WBGene00005289
WBGene00004002
WBGene00005063
WBGene00012012
WBGene00012045
WBGene00005595
WBGene00020881
WBGene00020870
WBGene00006123
WBGene00021081
WBGene00006287
WBGene00021121
WBGene00003182
WBGene00012491
WBGene00004909
WBGene00012795
WBGene00013002
WBGene00013058
WBGene00013064
WBGene00219312
WBGene00022262
WBGene00013856
WBGene00022550
WBGene00022552
WBGene00022617
WBGene00014200
WBGene00014239
WBGene00013944
WBGene00022694
WBGene00006865
WBGene00014007
WBGene00014009
WBGene00004971
WBGene00014045
WBGene00014048
WBGene00002087
WBGene00005082
Attribute_ofMicroarray_experimentWBPaper00026952:N2b_vs_lin-4b
WBPaper00026952:N2_vs_lin-14(n179ts)
WBPaper00026952:N2c_vs_lin-4c
WBPaper00026952:N2_vs_lin-14(n179ts)_rep2
WBPaper00026952:N2a_vs_lin-4a
RegulationRegulated_by_geneWBGene00003003
WBGene00002993