WormBase Tree Display for Gene: WBGene00017929
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WBGene00017929 | SMap | S_parent | Sequence | F29C4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | grld-1 | Paper_evidence | WBPaper00037743 | |||||
Person_evidence | WBPerson3993 | ||||||||
WBPerson1781 | |||||||||
Sequence_name | F29C4.7 | ||||||||
Molecular_name | F29C4.7a | ||||||||
F29C4.7a.1 | |||||||||
CE17724 | |||||||||
F29C4.7b | |||||||||
CE31493 | |||||||||
F29C4.7b.1 | |||||||||
Other_name | CELE_F29C4.7 | Accession_evidence | NDB | BX284604 | |||||
Public_name | grld-1 | ||||||||
DB_info | Database | AceView | gene | 4A876 | |||||
WormQTL | gene | WBGene00017929 | |||||||
WormFlux | gene | WBGene00017929 | |||||||
NDB | locus_tag | CELE_F29C4.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00017929|UniProtKB=H2KYB8 | |||||||
family | PTHR23189 | ||||||||
NCBI | gene | 176827 | |||||||
RefSeq | protein | NM_171238.5 | |||||||
NM_171237.8 | |||||||||
TREEFAM | TREEFAM_ID | TF354224 | |||||||
TrEMBL | UniProtAcc | Q8MXG5 | |||||||
H2KYB8 | |||||||||
UniProt_GCRP | UniProtAcc | H2KYB8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 30 Nov 2010 13:55:01 | WBPerson2970 | Name_change | CGC_name | grld-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | grld | ||||||||
Allele (63) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00021507 | ||||||||
00021508 | |||||||||
00021509 | |||||||||
00021510 | |||||||||
00123207 | |||||||||
00123208 | |||||||||
Contained_in_operon | CEOP4004 | ||||||||
Ortholog (37) | |||||||||
Paralog | WBGene00007016 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00008549 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00017778 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00021901 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Concise_description | grld-1 is orthologous to human RBM15 (OMIM:606077, mutated in infantile acute megakaryoblastic leukemia) and Drosophila NITO; GRLD-1 encodes a paralog of DIN-1; like DIN-1, it has N-terminal RNA recognition motifs (RRMs) and a C-terminal SID/RD (SMRT interaction domain/repressor) domain. | Paper_evidence | WBPaper00024451 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson1823 | |||||||||
WBPerson567 | |||||||||
Date_last_updated | 19 Nov 2010 00:00:00 | ||||||||
Automated_description | Predicted to enable RNA binding activity. Located in nucleus. Expressed in epithelial cell; lateral ganglion; muscle cell; and neurons. Is an ortholog of human RBM15 (RNA binding motif protein 15) and RBM15B (RNA binding motif protein 15B). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F29C4.7a | |||||||
F29C4.7b | |||||||||
Corresponding_CDS_history | F29C4.7c:wp261 | ||||||||
Corresponding_transcript | F29C4.7a.1 | ||||||||
F29C4.7b.1 | |||||||||
Other_sequence (55) | |||||||||
Associated_feature | WBsf651605 | ||||||||
WBsf667693 | |||||||||
WBsf995065 | |||||||||
WBsf995066 | |||||||||
WBsf995067 | |||||||||
WBsf1016486 | |||||||||
WBsf1016487 | |||||||||
WBsf1016488 | |||||||||
WBsf229648 | |||||||||
Experimental_info | RNAi_result | WBRNAi00045919 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00110316 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085121 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014106 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062227 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031573 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9156 | ||||||||
Expr9157 | |||||||||
Expr1012379 | |||||||||
Expr1037712 | |||||||||
Expr1149820 | |||||||||
Expr2012275 | |||||||||
Expr2030511 | |||||||||
Drives_construct | WBCnstr00013753 | ||||||||
Construct_product | WBCnstr00013753 | ||||||||
WBCnstr00013754 | |||||||||
Microarray_results (33) | |||||||||
Expression_cluster (103) | |||||||||
Interaction (19) | |||||||||
Map_info | Map | IV | Position | -26.9369 | Error | 0.011271 | |||
Positive | Positive_clone | F29C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031800 | ||||||||
WBPaper00037743 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |