WormBase Tree Display for Gene: WBGene00017929
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| WBGene00017929 | SMap | S_parent | Sequence | F29C4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | grld-1 | Paper_evidence | WBPaper00037743 | |||||
| Person_evidence | WBPerson3993 | ||||||||
| WBPerson1781 | |||||||||
| Sequence_name | F29C4.7 | ||||||||
| Molecular_name | F29C4.7a | ||||||||
| F29C4.7a.1 | |||||||||
| CE17724 | |||||||||
| F29C4.7b | |||||||||
| CE31493 | |||||||||
| F29C4.7b.1 | |||||||||
| Other_name | CELE_F29C4.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | grld-1 | ||||||||
| DB_info | Database | AceView | gene | 4A876 | |||||
| WormQTL | gene | WBGene00017929 | |||||||
| WormFlux | gene | WBGene00017929 | |||||||
| NDB | locus_tag | CELE_F29C4.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017929|UniProtKB=H2KYB8 | |||||||
| family | PTHR23189 | ||||||||
| NCBI | gene | 176827 | |||||||
| RefSeq | protein | NM_171238.5 | |||||||
| NM_171237.8 | |||||||||
| TREEFAM | TREEFAM_ID | TF354224 | |||||||
| TrEMBL | UniProtAcc | Q8MXG5 | |||||||
| H2KYB8 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KYB8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Nov 2010 13:55:01 | WBPerson2970 | Name_change | CGC_name | grld-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grld | ||||||||
| Allele | WBVar00878278 | ||||||||
| WBVar00878279 | |||||||||
| WBVar00878280 | |||||||||
| WBVar00878281 | |||||||||
| WBVar00878282 | |||||||||
| WBVar02030827 | |||||||||
| WBVar00878283 | |||||||||
| WBVar01838871 | |||||||||
| WBVar00878284 | |||||||||
| WBVar00878285 | |||||||||
| WBVar00878286 | |||||||||
| WBVar00878287 | |||||||||
| WBVar02109023 | |||||||||
| WBVar00244461 | |||||||||
| WBVar01984228 | |||||||||
| WBVar01846825 | |||||||||
| WBVar00301066 | |||||||||
| WBVar02123799 | |||||||||
| WBVar01499048 | |||||||||
| WBVar01499608 | |||||||||
| WBVar01495194 | |||||||||
| WBVar02068659 | |||||||||
| WBVar01490800 | |||||||||
| WBVar00414611 | |||||||||
| WBVar00414612 | |||||||||
| WBVar00414613 | |||||||||
| WBVar00414614 | |||||||||
| WBVar00414615 | |||||||||
| WBVar00414616 | |||||||||
| WBVar01646803 | |||||||||
| WBVar01450013 | |||||||||
| WBVar02053717 | |||||||||
| WBVar01607363 | |||||||||
| WBVar01996077 | |||||||||
| WBVar01607364 | |||||||||
| WBVar01996078 | |||||||||
| WBVar01607365 | |||||||||
| WBVar01499481 | |||||||||
| WBVar02133126 | |||||||||
| WBVar02112112 | |||||||||
| WBVar00878258 | |||||||||
| WBVar00878259 | |||||||||
| WBVar00878260 | |||||||||
| WBVar00878261 | |||||||||
| WBVar00878262 | |||||||||
| WBVar00878263 | |||||||||
| WBVar00878264 | |||||||||
| WBVar00878265 | |||||||||
| WBVar00878266 | |||||||||
| WBVar00878267 | |||||||||
| WBVar00317422 | |||||||||
| WBVar00878268 | |||||||||
| WBVar00878269 | |||||||||
| WBVar00296787 | |||||||||
| WBVar00878270 | |||||||||
| WBVar00878271 | |||||||||
| WBVar00296788 | |||||||||
| WBVar00878272 | |||||||||
| WBVar00878273 | |||||||||
| WBVar00878274 | |||||||||
| WBVar00878275 | |||||||||
| WBVar00878276 | |||||||||
| WBVar00878277 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021507 | ||||||||
| 00021508 | |||||||||
| 00021509 | |||||||||
| 00021510 | |||||||||
| 00123207 | |||||||||
| 00123208 | |||||||||
| Contained_in_operon | CEOP4004 | ||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00007016 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00008549 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00017778 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021901 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | grld-1 is orthologous to human RBM15 (OMIM:606077, mutated in infantile acute megakaryoblastic leukemia) and Drosophila NITO; GRLD-1 encodes a paralog of DIN-1; like DIN-1, it has N-terminal RNA recognition motifs (RRMs) and a C-terminal SID/RD (SMRT interaction domain/repressor) domain. | Paper_evidence | WBPaper00024451 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 19 Nov 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Located in nucleus. Expressed in epithelial cell; lateral ganglion; muscle cell; and neurons. Is an ortholog of human RBM15 (RNA binding motif protein 15) and RBM15B (RNA binding motif protein 15B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F29C4.7a | |||||||
| F29C4.7b | |||||||||
| Corresponding_CDS_history | F29C4.7c:wp261 | ||||||||
| Corresponding_transcript | F29C4.7a.1 | ||||||||
| F29C4.7b.1 | |||||||||
| Other_sequence (55) | |||||||||
| Associated_feature | WBsf651605 | ||||||||
| WBsf667693 | |||||||||
| WBsf995065 | |||||||||
| WBsf995066 | |||||||||
| WBsf995067 | |||||||||
| WBsf1016486 | |||||||||
| WBsf1016487 | |||||||||
| WBsf1016488 | |||||||||
| WBsf229648 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045919 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00110316 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085121 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014106 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062227 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031573 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9156 | ||||||||
| Expr9157 | |||||||||
| Expr1012379 | |||||||||
| Expr1037712 | |||||||||
| Expr1149820 | |||||||||
| Expr2012275 | |||||||||
| Expr2030511 | |||||||||
| Drives_construct | WBCnstr00013753 | ||||||||
| Construct_product | WBCnstr00013753 | ||||||||
| WBCnstr00013754 | |||||||||
| Microarray_results (33) | |||||||||
| Expression_cluster (103) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | IV | Position | -26.9369 | Error | 0.011271 | |||
| Positive | Positive_clone | F29C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031800 | ||||||||
| WBPaper00037743 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
