WormBase Tree Display for Variation: WBVar00244461
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WBVar00244461 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00244461 | |||
Other_name | snp_F29C4[1] | ||||
cewivar00200078 | |||||
F29C4.7b.1:c.1260-206G>C | |||||
F29C4.7a.1:c.1260-214G>C | |||||
HGVSg | CHROMOSOME_IV:g.122764C>G | ||||
Sequence_details | SMap | S_parent | Sequence | F29C4 | |
Flanking_sequences | tctcgattttggttgaggctcacaattttggttgaggctcaaaattttggttgaggctaacaattttggttgagg | aaaaaattttggttgaggctaaaaa | |||
Mapping_target | F29C4 | ||||
Type_of_mutation | Substitution | C | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00017929 | |||
Transcript | F29C4.7b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F29C4.7b.1:c.1260-206G>C | ||||
Intron_number | 5/7 | ||||
F29C4.7a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F29C4.7a.1:c.1260-214G>C | ||||
Intron_number | 5/7 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8657 VarS=CG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_F29C4.1 | |||||
[20040130 db] this Allele was previously named snp_F29C4.1 | |||||
[20090224 db] original Wicks name : F29C4:12498..13372@515 Psnp=0.8657 VarS=CG | |||||
[20090224 db] original Wicks id : yx29f11.s1@446,g,38 | |||||
Method | SNP_Wicks |