WormBase Tree Display for Gene: WBGene00017928
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| WBGene00017928 | SMap | S_parent | Sequence | F29C4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tut-1 | Paper_evidence | WBPaper00033042 | |||||
| Person_evidence | WBPerson4802 | ||||||||
| Sequence_name | F29C4.6 | ||||||||
| Molecular_name | F29C4.6 | ||||||||
| F29C4.6.1 | |||||||||
| CE17723 | |||||||||
| F29C4.6.2 | |||||||||
| Other_name | ctu-1 | Paper_evidence | WBPaper00035125 | ||||||
| tuc-1 | Paper_evidence | WBPaper00034713 | |||||||
| CELE_F29C4.6 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | tut-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 06 Apr 2009 15:16:23 | WBPerson9133 | Name_change | CGC_name | tut-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tut | ||||||||
| Allele (42) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (39) | |||||||||
| Contained_in_operon | CEOP4004 | ||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00022195 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | tut-1 encodes the C. elegans ortholog of Saccharomyces cerevisiae Ncs6p; TUT-1 activity is required for thiolation of uridine in lysine, glutamine and glutamate tRNAs; TUT-1 binds tRNAs in vitro. | Paper_evidence | WBPaper00033042 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 30 Sep 2009 00:00:00 | ||||||||
| Automated_description | Enables sulfurtransferase activity and tRNA binding activity. Involved in several processes, including gamete generation; gene expression; and vulval development. Predicted to be located in cytosol. Predicted to be part of cytosolic tRNA wobble base thiouridylase complex. Is an ortholog of human CTU1 (cytosolic thiouridylase subunit 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F29C4.6 | |||||||
| Corresponding_transcript | F29C4.6.1 | ||||||||
| F29C4.6.2 | |||||||||
| Other_sequence (44) | |||||||||
| Associated_feature | WBsf651604 | ||||||||
| WBsf995063 | |||||||||
| WBsf995064 | |||||||||
| WBsf1016484 | |||||||||
| WBsf1016485 | |||||||||
| WBsf229647 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014105 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00045918 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00064113 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026127 | ||||||||
| Expr1037711 | |||||||||
| Expr1149819 | |||||||||
| Expr2017636 | |||||||||
| Expr2035776 | |||||||||
| Drives_construct | WBCnstr00026907 | ||||||||
| Construct_product | WBCnstr00026907 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (92) | |||||||||
| Interaction (45) | |||||||||
| Map_info | Map | IV | Position | -26.9642 | Error | 0.009442 | |||
| Positive | Positive_clone | F29C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005736 | ||||||||
| WBPaper00033042 | |||||||||
| WBPaper00034713 | |||||||||
| WBPaper00035125 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046894 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060622 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
