WormBase Tree Display for Gene: WBGene00003615
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| WBGene00003615 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T12C9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-16 | Person_evidence | WBPerson600 | |||||
| Sequence_name | T12C9.6 | ||||||||
| Molecular_name | T12C9.6 | ||||||||
| T12C9.6.1 | |||||||||
| CE28079 | |||||||||
| Other_name | CELE_T12C9.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | nhr-16 | ||||||||
| DB_info | Database | AceView | gene | 2E729 | |||||
| WormQTL | gene | WBGene00003615 | |||||||
| WormFlux | gene | WBGene00003615 | |||||||
| NDB | locus_tag | CELE_T12C9.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003615|UniProtKB=Q27521 | |||||||
| family | PTHR46011 | ||||||||
| NCBI | gene | 173781 | |||||||
| RefSeq | protein | NM_062384.7 | |||||||
| SwissProt | UniProtAcc | Q27521 | |||||||
| TREEFAM | TREEFAM_ID | TF315401 | |||||||
| UniProt_GCRP | UniProtAcc | Q27521 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00036513 | ||||||||
| WBStrain00036514 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (69) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Concise_description | nhr-16 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. | Paper_evidence | WBPaper00003416 | |||||
| WBPaper00003754 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 16 Nov 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T12C9.6 | |||||||
| Corresponding_transcript | T12C9.6.1 | ||||||||
| Associated_feature | WBsf987600 | ||||||||
| WBsf1012087 | |||||||||
| WBsf221128 | |||||||||
| Transcription_factor | WBTranscriptionFactor000602 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00053198 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027859 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013086 | ||||||||
| Expr1156788 | |||||||||
| Expr2014070 | |||||||||
| Expr2032310 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (79) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | II | Position | -4.40014 | Error | 0.008982 | |||
| Positive | Positive_clone | T12C9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003754 | ||||||||
| WBPaper00027309 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
