WormBase Tree Display for Gene: WBGene00011396
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| WBGene00011396 | SMap | S_parent | Sequence | T03E6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-271 | Person_evidence | WBPerson600 | |||||
| Sequence_name | T03E6.3 | ||||||||
| Molecular_name | T03E6.3 | ||||||||
| T03E6.3.1 | |||||||||
| CE41007 | |||||||||
| Other_name | CELE_T03E6.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-271 | ||||||||
| DB_info | Database | AceView | gene | 5R58 | |||||
| WormQTL | gene | WBGene00011396 | |||||||
| WormFlux | gene | WBGene00011396 | |||||||
| NDB | locus_tag | CELE_T03E6.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011396|UniProtKB=Q9XU11 | |||||||
| family | PTHR46800 | ||||||||
| NCBI | gene | 188016 | |||||||
| RefSeq | protein | NM_074793.7 | |||||||
| TREEFAM | TREEFAM_ID | TF319262 | |||||||
| TrEMBL | UniProtAcc | Q9XU11 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XU11 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-271 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (142) | |||||||||
| Strain | WBStrain00036827 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00101412 | ||||||||
| 00101413 | |||||||||
| 00101414 | |||||||||
| 00101415 | |||||||||
| 00118661 | |||||||||
| 00118662 | |||||||||
| 00118663 | |||||||||
| 00118664 | |||||||||
| Ortholog (54) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in amphid neurons and rectal gland cell. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T03E6.3 | |||||||
| Corresponding_CDS_history | T03E6.3:wp175 | ||||||||
| Corresponding_transcript | T03E6.3.1 | ||||||||
| Associated_feature | WBsf978826 | ||||||||
| WBsf235145 | |||||||||
| Transcription_factor | WBTranscriptionFactor000283 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00107189 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052271 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035089 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018074 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7649 | ||||||||
| Expr1020497 | |||||||||
| Expr1155902 | |||||||||
| Expr2014161 | |||||||||
| Expr2032405 | |||||||||
| Drives_construct | WBCnstr00012794 | ||||||||
| WBCnstr00030690 | |||||||||
| Construct_product | WBCnstr00030690 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (32) | |||||||||
| Interaction (105) | |||||||||
| Map_info | Map | V | Position | 10.5611 | Error | 0.025065 | |||
| Positive | Positive_clone | T03E6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
