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WormBase Tree Display for Gene: WBGene00003573

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Name Class

WBGene00003573EvidenceAuthor_evidenceSchwartz EM
SMapS_parentSequenceC13D9
IdentityVersion1
NameCGC_namencx-8
Sequence_nameC13D9.7
Molecular_nameC13D9.7
C13D9.7.1
CE08140
Other_nameCELE_C13D9.7Accession_evidenceNDBBX284605
Public_namencx-8
DB_infoDatabaseAceViewgene5F462
WormQTLgeneWBGene00003573
WormFluxgeneWBGene00003573
NDBlocus_tagCELE_C13D9.7
PanthergeneCAEEL|WormBase=WBGene00003573|UniProtKB=O16241
familyPTHR12266
NCBIgene182575
RefSeqproteinNM_071940.7
TREEFAMTREEFAM_IDTF323444
TrEMBLUniProtAccO16241
UniProt_GCRPUniProtAccO16241
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classncx
Allele (190)
RNASeq_FPKM (74)
GO_annotation (11)
Ortholog (47)
ParalogWBGene00003571Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003572Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003574Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003575Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionncx-8 encodes a putative Na[+]/Ca[2+] exchanger of uncertainstoichiometry and affinity, orthologous to human SLC24A6 and paralogousto NCX-6/-7 and NCX-9/-10; NCX-8 may function intracellularly; NCX-8 has tandem Calx-alpha domains predicted to carry out ion transport; NCX-8 is required for normally high levels of body fat.Paper_evidenceWBPaper00012774
WBPaper00028596
WBPaper00031156
WBPaper00031157
WBPaper00031158
WBPaper00031159
WBPaper00031160
Curator_confirmedWBPerson567
Date_last_updated07 Nov 2007 00:00:00
Automated_descriptionPredicted to enable calcium:sodium antiporter activity. Predicted to be involved in intracellular calcium ion homeostasis and monoatomic cation transport. Predicted to be located in membrane. Expressed in intestine and pharynx. Is an ortholog of human SLC8B1 (solute carrier family 8 member B1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC13D9.7
Corresponding_transcriptC13D9.7.1
Other_sequenceCR11255
Associated_featureWBsf233628
WBsf233629
Experimental_infoRNAi_resultWBRNAi00023936Inferred_automaticallyRNAi_primary
WBRNAi00010691Inferred_automaticallyRNAi_primary
WBRNAi00112438Inferred_automaticallyRNAi_primary
WBRNAi00023136Inferred_automaticallyRNAi_primary
WBRNAi00040442Inferred_automaticallyRNAi_primary
WBRNAi00023648Inferred_automaticallyRNAi_primary
WBRNAi00023043Inferred_automaticallyRNAi_primary
WBRNAi00112439Inferred_automaticallyRNAi_primary
Expr_patternExpr11162
Expr1025533
Expr1144509
Expr2013925
Expr2032164
Drives_constructWBCnstr00018022
WBCnstr00036032
Construct_productWBCnstr00036032
Microarray_results (19)
Expression_cluster (125)
Interaction (32)
Map_infoMapVPosition-3.61451Error0.002001
PositivePositive_cloneC13D9Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene