WormBase Tree Display for Gene: WBGene00018548

WBGene00018548 SMap: S_parent: Sequence: F47C12
  Identity: Version: 2
    Name: CGC_name: clec-79 Person_evidence: WBPerson261
            WBPerson655
      Sequence_name: F47C12.4
      Molecular_name: F47C12.4
        F47C12.4.1
        CE10676
      Other_name: CELE_F47C12.4 Accession_evidence: NDB BX284604
      Public_name: clec-79
    DB_info: Database: AceView gene 4E739
        WormQTL gene WBGene00018548
        WormFlux gene WBGene00018548
        NDB locus_tag CELE_F47C12.4
        Panther gene CAEEL|WormBase=WBGene00018548|UniProtKB=Q20528
          family PTHR47753
        NCBI gene 177154
        RefSeq protein NM_068049.4
        TREEFAM TREEFAM_ID TF317115
        TrEMBL UniProtAcc Q20528
        UniProt_GCRP UniProtAcc Q20528
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:00 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 28 Sep 2005 17:40:12 WBPerson2970 Name_change: CGC_name: clec-79
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: clec
    Allele (54)
    RNASeq_FPKM (74)
    Ortholog (24)
    Paralog: WBGene00007897 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00008659 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00008660 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00018575 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00021288 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00021579 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00019950 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00009475 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015193 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00044078 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in germ line; hypodermis; and in male based on proteomic and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-four chemicals including hydrogen sulfide; Ethanol; and methylmercury hydroxide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F47C12.4
    Corresponding_transcript: F47C12.4.1
    Associated_feature: WBsf996129
      WBsf228146
  Experimental_info: RNAi_result: WBRNAi00047638 Inferred_automatically: RNAi_primary
      WBRNAi00032433 Inferred_automatically: RNAi_primary
      WBRNAi00001939 Inferred_automatically: RNAi_primary
      WBRNAi00015178 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019135
      Expr1151480
      Expr2010210
      Expr2028451
    Microarray_results (17)
    Expression_cluster (192)
    Interaction (221)
  Map_info: Map: IV Position: -1.19619 Error: 0.011908
    Positive: Positive_clone: F47C12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00032258
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene