WormBase Tree Display for Gene: WBGene00018548
expand all nodes | collapse all nodes | view schema
WBGene00018548 | SMap | S_parent | Sequence | F47C12 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | clec-79 | Person_evidence | WBPerson261 | |||
WBPerson655 | |||||||
Sequence_name | F47C12.4 | ||||||
Molecular_name | F47C12.4 | ||||||
F47C12.4.1 | |||||||
CE10676 | |||||||
Other_name | CELE_F47C12.4 | Accession_evidence | NDB | BX284604 | |||
Public_name | clec-79 | ||||||
DB_info | Database | AceView | gene | 4E739 | |||
WormQTL | gene | WBGene00018548 | |||||
WormFlux | gene | WBGene00018548 | |||||
NDB | locus_tag | CELE_F47C12.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00018548|UniProtKB=Q20528 | |||||
family | PTHR47753 | ||||||
NCBI | gene | 177154 | |||||
RefSeq | protein | NM_068049.4 | |||||
TREEFAM | TREEFAM_ID | TF317115 | |||||
TrEMBL | UniProtAcc | Q20528 | |||||
UniProt_GCRP | UniProtAcc | Q20528 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | clec | ||||||
Allele (54) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (24) | |||||||
Paralog | WBGene00007897 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | |||||||
WBGene00008659 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00008660 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00018575 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00021288 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00021579 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Inparanoid_8 | |||||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00019950 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00009475 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00015193 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00044078 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Automated_description | Enriched in germ line; hypodermis; and in male based on proteomic and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-four chemicals including hydrogen sulfide; Ethanol; and methylmercury hydroxide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F47C12.4 | |||||
Corresponding_transcript | F47C12.4.1 | ||||||
Associated_feature | WBsf996129 | ||||||
WBsf228146 | |||||||
Experimental_info | RNAi_result | WBRNAi00047638 | Inferred_automatically | RNAi_primary | |||
WBRNAi00032433 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001939 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015178 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1019135 | ||||||
Expr1151480 | |||||||
Expr2010210 | |||||||
Expr2028451 | |||||||
Microarray_results (17) | |||||||
Expression_cluster (192) | |||||||
Interaction (221) | |||||||
Map_info | Map | IV | Position | -1.19619 | Error | 0.011908 | |
Positive | Positive_clone | F47C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00032258 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |