WormBase Tree Display for Gene: WBGene00009988
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| WBGene00009988 | SMap | S_parent | Sequence | F53F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F53F4.4 | |||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_F53F4.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | F53F4.4 | ||||||||
| DB_info | Database | AceView | gene | 5O77 | |||||
| WormQTL | gene | WBGene00009988 | |||||||
| WormFlux | gene | WBGene00009988 | |||||||
| NDB | locus_tag | CELE_F53F4.4 | |||||||
| NCBI | gene | 186177 | |||||||
| RefSeq | protein | NM_001269600.3 | |||||||
| NM_001269601.1 | |||||||||
| NM_001269599.3 | |||||||||
| NM_001269602.3 | |||||||||
| TrEMBL | UniProtAcc | D5MCS7 | |||||||
| D5MCS6 | |||||||||
| C6KRL9 | |||||||||
| C6KRL8 | |||||||||
| UniProt_GCRP | UniProtAcc | D5MCS6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (142) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (27) | |||||||||
| Structured_description | Automated_description | Enriched in ABplapapppp; ABprapapppp; CAN; rectal epithelial cell; and touch receptor neurons based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by ten chemicals including methylmercuric chloride; Psoralens; and allantoin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53F4.4a | |||||||
| F53F4.4b | |||||||||
| F53F4.4c | |||||||||
| F53F4.4d | |||||||||
| Corresponding_CDS_history | F53F4.4:wp182 | ||||||||
| F53F4.4:wp203 | |||||||||
| F53F4.4a:wp207 | |||||||||
| F53F4.4b:wp213 | |||||||||
| Corresponding_transcript | F53F4.4a.1 | ||||||||
| F53F4.4b.1 | |||||||||
| F53F4.4c.1 | |||||||||
| F53F4.4d.1 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015526 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00048154 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010764 | ||||||||
| Expr1151967 | |||||||||
| Expr2004082 | |||||||||
| Expr2022306 | |||||||||
| Drives_construct | WBCnstr00031760 | ||||||||
| Construct_product | WBCnstr00031760 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (87) | |||||||||
| SAGE_tag | SAGE:tcctccaccc | Strand | Antisense | ||||||
| SAGE:ttgtcgatta | Strand | Antisense | |||||||
| SAGE:tgacgtcact | Strand | Antisense | |||||||
| SAGE:tcacaaattt | Strand | Antisense | |||||||
| SAGE:ccttcgaaag | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ccttcgaaagctggttt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (15) | |||||||||
| Map_info | Positive | Positive_clone | F53F4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 5.46569 | |||||||
| Method | Gene |
